Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq460 187 3e-42 >seq460 Length=52445 Score = 187 bits (206), Expect = 3e-42 Identities = 327/470 (70%), Gaps = 16/470 (3%) Strand=Plus/Minus Query 154598 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 154657 || ||| ||||| |||||| ||| || |||||||| ||| | ||| | || || || || Sbjct 19145 TGTTATAACAGGATTTGATGGTATTTCTTTACAACCAAACTCTGGAGCTCAAGGAGAATA 19086 Query 154658 TGCAGGACTGTTA-GCA--ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAA 154714 | ||||| ||| | | || |||||||||| || | || |||||||| | || Sbjct 19085 TACAGGA---TTACGTATTATTGGAGCATACCATAAATCAAAGGGTGATGATAAGCGTAA 19029 Query 154715 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGG 154774 ||| ||||| || || | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 19028 TGTTTGTTTAATTCCTGTATCAGCTCATGGTACAAATCCCGCATCTGCTGCGATGGCAGG 18969 Query 154775 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGA 154834 ||| |||||||| ||| || ||||| || ||||| | | || || |||||| | || Sbjct 18968 TATGGAAGTTGTACCTGTTAAATGTGAAAATAATGGTGATCTTGATATGAAAGATTTGGA 18909 Query 154835 GAAGAAAGCAATCA----TGAATACATTTGAACTGTCATGTATTATGATTACATACCCAT 154890 | || || | || | || ||| | | | | | | ||| |||| || |||| Sbjct 18908 AGAAAAGGCTACCAAATTTAAAGACAGATTAGCAGC----TTTCATGGTTACTTATCCAT 18853 Query 154891 CTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATG 154950 | ||| |||||||||||||| || | | |||| | || ||||| | |||| Sbjct 18852 CAACATTTGGTGTATTTGAAAGCGGAGTTGTAAAAGCATGTGAAATAATTCATCAAAATG 18793 Query 154951 GTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCAT 155010 | || || || ||| | |||||||||||| |||||||||| | ||| || | |||| Sbjct 18792 GAGGACAAGTTTATATGGATGGAGCAAATTTAAATGCACAAATTGGATTATGTACACCAG 18733 Query 155011 GTGAGTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTG 155059 || | || || || ||||| |||||| | || |||||||||||||||| Sbjct 18732 CTG-GCATAGGAGCTGATGTTTGTCATTTGAATCTACATAAAACATTCTG 18684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579131739168640