Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq460 181 1e-40 >seq460 Length=52445 Score = 181 bits (200), Expect = 1e-40 Identities = 326/470 (69%), Gaps = 16/470 (3%) Strand=Plus/Minus Query 159273 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 159332 || ||| ||||| |||||| ||| || |||||||| ||| | ||| | || || || || Sbjct 19145 TGTTATAACAGGATTTGATGGTATTTCTTTACAACCAAACTCTGGAGCTCAAGGAGAATA 19086 Query 159333 TGCAGGACTGTTA-GCA--ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAA 159389 | ||||| ||| | | || |||||||||| || | || |||||||| | || Sbjct 19085 TACAGGA---TTACGTATTATTGGAGCATACCATAAATCAAAGGGTGATGATAAGCGTAA 19029 Query 159390 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGG 159449 ||| ||||| || || | ||||| ||||| || ||||| ||||| || | ||||||||| Sbjct 19028 TGTTTGTTTAATTCCTGTATCAGCTCATGGTACAAATCCCGCATCTGCTGCGATGGCAGG 18969 Query 159450 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGA 159509 ||| |||||||| ||| || ||||| || |||| | | || || |||||| | || Sbjct 18968 TATGGAAGTTGTACCTGTTAAATGTGAAAATAATGGTGATCTTGATATGAAAGATTTGGA 18909 Query 159510 GAAGAAAGCAATCA----TGAATACATTTGAACTGTCATGTATTATGATTACATATCCAT 159565 | || || | || | || ||| | | | | | | ||| |||| ||||||| Sbjct 18908 AGAAAAGGCTACCAAATTTAAAGACAGATTAGCAGC----TTTCATGGTTACTTATCCAT 18853 Query 159566 CTACACATGGTGTATTTGAAA-CAAACATCAGACAGATATGTAAGATTGTTCATGAGAAT 159624 | ||| |||||||||||||| | | | | || |||| | || ||||| | ||| Sbjct 18852 CAACATTTGGTGTATTTGAAAGCGGAGTTGTAAAAG-CATGTGAAATAATTCATCAAAAT 18794 Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCA 159684 || || || || ||| | ||||| |||||| |||||||||| | || || | |||| Sbjct 18793 GGAGGACAAGTTTATATGGATGGAGCAAATTTAAATGCACAAATTGGATTATGTACACCA 18734 Query 159685 TGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTG 159734 || | || || ||||| |||||| | || ||||||| |||||||| Sbjct 18733 GCTGGCATAGGAGCTGATGTTTGTCATTTGAATCTACATAAAACATTCTG 18684 Score = 118 bits (130), Expect = 1e-21 Identities = 200/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 158407 GGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 158466 || || ||||| ||| ||||||||||| | || || | |||||| ||||| | || Sbjct 20168 GGAGAATGGGGTGCTGATATTGCTGTAGGCAATAGTCAGCGCTTTGGTGTTCCTTTAGGT 20109 Query 158467 TACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 158526 || || || || ||||| ||||| ||||| | |||| | |||| ||| || || Sbjct 20108 TATGGTGGCCCGCATGCCGCATTTTTTGCTTGCAAAGACCAACTTAAGCGAAGAATGCCA 20049 Query 158527 GGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTA 158586 || || | || || || ||| || |||||||| || | || | || Sbjct 20048 GGTCGATTAGTTGGGGTCTCGCGGGATGCATCTGGAAATAAAGCTTATCGTTTGTCGTTA 19989 Query 158587 CAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAA 158646 || || ||||| || ||||| ||| |||| ||||| || ||||| || || || |||||| Sbjct 19988 CAAACCAGAGAACAACATATTAGACGAGAGAAAGCTACTAGTAATATATGTACTGCACAA 19929 Query 158647 GCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGA 158696 ||||| ||||||||||| ||| | ||||| ||||||||| |||| Sbjct 19928 GCACTCTTGGCTAATATGGCTGCTATGTATGCTATATATCATGGACCAGA 19879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587968902234560