Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq256 113 3e-20 seq218 86.0 4e-12 >seq256 Length=68436 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||||| ||||| || ||||| |||||| ||||| |||| || Sbjct 65656 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 65715 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || || |||||||| ||| | || | || || ||||| | Sbjct 65716 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 65775 Query 34893 ATCTT--CTGTT---TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| || || ||| |||| ||||| || ||||| || | || |||| Sbjct 65776 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGAC-----TCAACTTCCAAAGTAATGG 65830 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || ||||| || ||||| || |||||| Sbjct 65831 TTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 65865 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| |||||| ||||| || ||||| |||||| ||||| |||| || || ||| Sbjct 65890 TGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGT 65949 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || || || || || || |||||||||||| | || | |||||||| || ||| || Sbjct 65950 TTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTG 66009 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 ||| || | || | || || ||| || || | ||| |||||||| || ||| Sbjct 66010 GTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTG 66069 Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || ||||| |||||| Sbjct 66070 AGTGTCTTTACGAAGATTTGCATA 66093 >seq218 Length=131350 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||| ||||||||||| | | || |||| |||| ||||| ||||| || Sbjct 41594 TTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAA 41653 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-GG 34908 || | ||||| || ||| | || | || ||||| || |||||| ||| || | Sbjct 41654 GATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTG 41713 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| | ||| || ||| || || | || || ||||| || ||||||||||| | Sbjct 41714 AT-CTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGA 41772 Query 34969 CAAAGATCTGCATA 34982 | || || |||||| Sbjct 41773 CGAAAATTTGCATA 41786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324589303339488