Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq37 118 1e-21 seq1083 84.2 3e-11 >seq37 Length=134598 Score = 118 bits (130), Expect = 1e-21 Identities = 171/235 (73%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 104857 TATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATT-CTAACTTGTTAAATG 104915 |||| | |||||||||||||| | || |||||| |||||| | ||| | |||| | Sbjct 88972 TATTATAGAAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACAT-TTAACCG 88914 Query 104916 AAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTC--TTGTGG 104973 ||| ||| || | | ||| | | ||||||||| ||| | | ||| ||| ||| || Sbjct 88913 AAAAAGGTATTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTG-GG 88855 Query 104974 ATTTCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGC 105033 | |||| | |||||||||||||||| || || |||||||||| |||||||||||| Sbjct 88854 CTATCACATA-GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTT 88796 Query 105034 TGGAGCTCAATATATCGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAA 105088 ||| ||| | || || || || ||||| || || || || ||||| | || ||| Sbjct 88795 TGGTGCTGAGTACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCAA 88741 >seq1083 Length=46835 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 126568 TTAAAATTGTTATTGGTCAATTACGTATACCAGAAATTGGAGACAAATTTTGTTCTGGA- 126626 ||||||| | || | ||| | | ||||||||| | ||||| ||||||| ||| | Sbjct 19847 TTAAAATATTAATAAGACAAACAAGAATACCAGAATTAGGAGATAAATTTTCTTCACGTC 19788 Query 126627 ATGGCCCAAAAAGGAACTTGTGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAA 126686 |||| | ||||||| || ||||| ||| |||||||||||||||| ||| | | Sbjct 19787 ATGGAC-AAAAAGGTGTATGCGGTATTATTGTACCACAAGAAGATATGCCATTTGCTGAT 19729 Query 126687 TCAGGTATGACCCCCGATATTATAATTAATCCAAATTGTATACCGTCAAGAATGACCATA 126746 || ||||| || |||||||| || |||||| || | | || ||| | ||||| || Sbjct 19728 TCTGGTATATGTCCTGATATTATCATGAATCCACATGGATTTCCTTCACGTATGACTGTA 19669 Query 126747 AATCAAATAATTG 126759 | |||| |||| Sbjct 19668 GGTAAAATGATTG 19656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658311056472160