Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1647 351 1e-91 seq54 277 2e-69 seq370 123 3e-23 >seq1647 Length=14880 Score = 351 bits (388), Expect = 1e-91 Identities = 676/991 (68%), Gaps = 37/991 (4%) Strand=Plus/Minus Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA-CACA 48177 ||||||| ||||||||| || | |||| ||| |||||| |||| ||| || | Sbjct 3418 TAACTTC--AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAA 3361 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | || ||||| |||| || || || ||||||| | ||| | | |||||| | Sbjct 3360 TAAACT-CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTG 3302 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 | ||||||||||| | | | |||||| || ||| |||| |||| | || | || Sbjct 3301 CATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAA 3242 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | || | || |||| |||||| | ||||||||| || || | | || || ||||| | Sbjct 3241 AATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGT 3182 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | ||||||||||| | |||||| |||||||| |||||||| | |||||| || | ||| | Sbjct 3181 TTCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTC 3122 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 ||||||| |||||| ||||| | ||||||| ||| | || | || ||| ||| Sbjct 3121 CATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGT 3062 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | ||| ||||||||||| | ||||| || | || || ||| | |||||||| | Sbjct 3061 TCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGA 3002 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 |||| ||||| ||||||| ||||| |||| ||||||||||| || | ||| || | Sbjct 3001 TTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAG 2942 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 || || | |||||| || || |||||||| ||| |||| | || ||||| | || | Sbjct 2941 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 2882 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 | || ||||||||| ||| || ||||| | || || || | | ||| ||||| | Sbjct 2881 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 2822 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| ||| || | || ||| ||| | |||| |||||||| ||| |||| | Sbjct 2821 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 2762 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTA 48837 |||||||| |||||||| || ||| | | || |||||| ||| || | ||||| | Sbjct 2761 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 2702 Query 48838 TTCTTTCCTTA-TGTTTATATACTACATCCATTACATTTTT-TGATATAATTGA------ 48889 | ||||| | |||| || || | || || | ||||| || || ||||| Sbjct 2701 GTTTTTCCGAATTGTTCAT-CACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCG 2644 Query 48890 -TTCC--------------------TTGTAAAGATCTTCTACAACATCACTAAATAtttt 48928 |||| || ||||||||||| ||||||| ||| | ||| Sbjct 2643 TTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTT 2584 Query 48929 ttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGG 48988 ||| |||||||||||||||||||| | || || | |||||| | | ||||| || || Sbjct 2583 TTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGG 2524 Query 48989 ATGAATTGTTGTACATGTAC-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAG 49047 ||| | || || ||| ||| | ||||||| || || |||||||||| ||| Sbjct 2523 ATGTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 2465 Query 49048 TTACACCTGTATATATTCCTTGAATAACTTT 49078 | |||||| ||| | |||| ||| || || Sbjct 2464 TAACACCTTGATAAACTCCTGAAATGACCTT 2434 Score = 149 bits (164), Expect = 7e-31 Identities = 228/329 (69%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 47315 AGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATA 47374 ||| ||||||||||||||||| |||| || || | || || || || || ||||| Sbjct 4443 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 4384 Query 47375 TGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 ||||| | | |||||||| || || ||||| | ||| ||||| |||||||| | ||| Sbjct 4383 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 4324 Query 47435 AACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 | ||||| ||||| ||| |||| || | ||| | |||||||| Sbjct 4323 GAGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATC 4264 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 ||| | ||| | || |||||||||| | ||| ||||| | ||| ||||| | ||| Sbjct 4263 CCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGG 4204 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 || || | ||| | | ||| || ||| || || | |||||||| |||||| || Sbjct 4203 TGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAA 4144 Query 47615 TGCACTATAATATATTGTTTCAAATATTT 47643 ||||| || ||| ||||| |||||||||| Sbjct 4143 TGCACCATGATACATTGTCTCAAATATTT 4115 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 47058 TAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47117 || ||||||||||||||||| || | | | | ||||| | |||||||||||||||| | Sbjct 4779 TACAAATGCATACTAGTTAACTTTGCTTTAGTCGGTTCCGCAATATGAATATTAAGACTT 4720 Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177 ||| ||||||||||| ||||| | ||| || |||||||| | |||||| |||| | | Sbjct 4719 TGAGATTGATCAATAAAAGCACCACGATCGGCCGCCATATCAATAATAACTTTTTGCGAT 4660 Query 47178 ATCTCCCATACTGTTTTATA 47197 || |||||| |||||||| Sbjct 4659 ATTTCCCATGTAGTTTTATA 4640 Score = 102 bits (112), Expect = 9e-17 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 47856 TTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT 47915 |||||| ||||||| | | ||||||| || | ||||||||||| || |||| Sbjct 3754 TTATTTTCAACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCC 3695 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 || | | ||||| | || || | ||| | ||||| ||||||||| ||||| | |||| Sbjct 3694 GGGCTCGAATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTT 3635 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 || |||||| ||||| | || ||||| |||||| | ||||| || ||||| Sbjct 3634 TGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCG 3575 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAAC 48064 ||||| ||||||| || | | |||| || Sbjct 3574 ATCTGGGATTCAAGAATTGCTGTCCAGAC 3546 >seq54 Length=215934 Score = 277 bits (306), Expect = 2e-69 Identities = 374/518 (72%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| ||||| ||||||||| || | || | ||||||||||||||| ||||| || | Sbjct 102354 TCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTT 102295 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATC 18775 ||| || | |||||||||||||| ||||| | | |||||| | |||| | Sbjct 102294 GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCAC 102235 Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAAT 18835 | | | | | || || |||||| |||||||||| ||||||| | ||||| | || | Sbjct 102234 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGT 102175 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 |||| || ||||| ||||| |||| ||| ||||| | ||||||||||||||| | || | Sbjct 102174 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 102115 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG--GTATA-GAAGATGTTTAA 18952 | || | |||||||| | | || | || | ||||| || | ||||||| | | Sbjct 102114 CTTCCGCTATAATAGCTTCTAC---AGTTTTTGTTGGAGGTCGTGCACGAAGATGAGTGA 102058 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 | | | |||||||||||||||||| | ||| || |||| | || | ||| || |||| Sbjct 102057 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 101998 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | ||||| || ||||||| ||||||||| |||||||| || || || || || | ||||| Sbjct 101997 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 101938 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 |||||||||| ||||| || || ||||| || || || | ||| || | || || | Sbjct 101937 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGATTCCT 101878 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTT 19170 ||| ||||||| || |||||||| || || ||| Sbjct 101877 TATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 101840 Score = 192 bits (212), Expect = 7e-44 Identities = 230/306 (75%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 || || | ||| | ||| ||||| | ||||||||||||||| |||||||| || Sbjct 101706 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 101647 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 ||||||||||| ||||||||||||||||||| || || |||||| ||| ||| | ||| Sbjct 101646 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 101587 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || ||||||||||| || || ||||| || ||||| || || || || || |||| Sbjct 101586 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 101527 Query 19405 A--AATGTTT-TTCATC-TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATC 19460 | ||| ||| |||||| | | ||| || | ||||||||| ||||| || || | || Sbjct 101526 AAGAATTTTTCTTCATCGTTAAGTTTAT-ACTCCCAATCATTCATATCCTTGGAAAGGTC 101468 Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATAT-CAC 19519 ||||| ||||| |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 101467 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 101408 Query 19520 GATATT 19525 ||||| Sbjct 101407 AATATT 101402 >seq370 Length=116867 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||||||||| |||| | | || ||| || || |||||||| || || || | | Sbjct 20320 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 20379 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||| || |||||| ||||||| |||| ||||||| || | || ||||| |||||| Sbjct 20380 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 20439 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 ||| | | ||| ||||| | ||| || || ||||| |||||||| ||||| | ||| Sbjct 20440 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 20499 Query 48729 GGTCTTTCAACAA 48741 ||||||||||||| Sbjct 20500 GGTCTTTCAACAA 20512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562030132873440