Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_018281.1 Length=43581 Score E Sequences producing significant alignments: (Bits) Value seq5866 89.7 1e-13 >seq5866 Length=1231 Score = 89.7 bits (98), Expect = 1e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 31492 AACCTAAAGCATCTTATTTAGATACTATCTTGAATAATAAAAGTTTGGTCACTGTAGGAC 31551 |||| ||||| ||| | || | |||||| | |||||| | |||| | | | Sbjct 181 AACCAAAAGCCGACTATGTTGACAGTATCTTTGAAAATAAAGAACTTGTCAATATTAACC 240 Query 31552 AAATTGCAAAAGATTACGGAATGTCAGCTCAA-GCACTTAATAAATTGCTTCATGATCTA 31610 |||| |||||||| || ||||||||||||||| ||| | || |||| |||||| | || Sbjct 241 AAATAGCAAAAGACTATGGAATGTCAGCTCAACGCA-TGAACGAATTACTTCATAAAGTA 299 Query 31611 AAAGTTCAATACAAACAATCTGGTCAATGGTTACTTTA 31648 ||||||||||| |||| ||| |||||||| ||||| Sbjct 300 AAAGTTCAATATCGACAAAATGGGCAATGGTTGCTTTA 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139319074717736