Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq3016 87.8 3e-12 >seq3016 Length=3907 Score = 87.8 bits (96), Expect = 3e-12 Identities = 85/106 (80%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 68656 GTCGCCGGTTCGATCCCGGCCGCTAGGTCCAGTTTCTGA--TGGGGC-ATAGCTCAGG-G 68711 |||| ||||||||| ||| | | | |||| ||| ||| |||| | ||||||||| | Sbjct 975 GTCGTCGGTTCGATTCCGATCACCCGCTCCATTTTATGAAATGGGCCTATAGCTCAGCTG 1034 Query 68712 GTTAGAGCGCGCGCTTGATAAGCGTGAGGCCGTTGGTTCGAGACCA 68757 |||||||||| ||| |||||||||||||| || ||||||||| ||| Sbjct 1035 GTTAGAGCGCACGCCTGATAAGCGTGAGGTCGATGGTTCGAGTCCA 1080 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 ||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||| Sbjct 683 GCGGGGTGGAGCAGTTCGGTAGCTCGTCGGGCTCATAACCCGAAGGTCACAGGTTCAAAT 742 Query 133023 CCCTCCCCCGCATCCA 133038 || ||||||| ||| Sbjct 743 CCTGTCCCCGCAACCA 758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895641037492320