Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_019417.1 Length=59203 Score E Sequences producing significant alignments: (Bits) Value seq11023 868 0.0 >seq11023 Length=509 Score = 868 bits (962), Expect = 0.0 Identities = 498/509 (98%), Gaps = 0/509 (0%) Strand=Plus/Minus Query 12967 CATGTTCGCCTTCGCGCAGGGCTGGCCGCTTAACGAATCCCTCGTCGCGCCGGAAGCCGT 13026 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 509 CATGTTCGCCTTCGCGCAGGGCTGGCCGCTTAACGAAGCCCTCGTCGCGCCGGAAGCAGT 450 Query 13027 TGCACCGTCGGCCTCCCGGTCATGGCGGTACGAATTCCGGAACGTCAAAGACAGTAACGA 13086 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 449 TGCACCGTCGGCCTCCCGGTCATGGCGGTACGAATTCCGGAACGTCAAAGACAGCAACGA 390 Query 13087 TTATTCCGAATTAGTCAAAGTGCTACATGATGCGCTGACACAAGCCGCGTATGGTAAAGG 13146 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 389 TTATTCCGAATTAGTCAAAGTGCTACACGATGCGCTGACGCAAGCCGCGTATGGTAAAGG 330 Query 13147 GCGGGAGCGACACGCCAATGACCTGCCGTTCAGCCAGCAGCCGATGAACGCCATTTCTGA 13206 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 GCGCGAGCGCCACGCCAATGACCTGCCGTTCAGCCAGCAGCCGATGAACGCCATTTCTGA 270 Query 13207 TCTGATCGATAGCCCGCTTGGATTGGTCTATCAGGTGTGCAAGAAGGTCGTAGAAGGCGT 13266 ||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 269 CCTGATCGGTAGCCCGCTCGGCTTGGTCTATCAGGTGTGCAAGAAGGTCGTAGAAGGCGT 210 Query 13267 CAACCTGCCAACGCATGACCAAAGGGTTAGGGAGTTGCTCGGCGTGATCAATTATACTGC 13326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209 CAACCTGCCAACGCATGACCAAAGGGTTAGGGAGTTGCTCGGCGTGATCAATTATACTGC 150 Query 13327 CGGGATTGTCATCTGGCTAAATCGCCACCAATCAAATCCACCGAAGGAATAAAGGGGCCA 13386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 149 CGGGATTGTCATCTGGCTAAATCGCCACCAATCAAATCCACCGAAGGAATAAAGGGGCCA 90 Query 13387 CCATGAAGAAGATCGCTGCGCTAACGCTGTTTGTATTGATTATCTGCGGTGTGCTGTTTG 13446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 CCATGAAGAAGATCGCTGCGCTAACGCTGTTTGTATTGATTATCTGCGGTGTGCTGTTTG 30 Query 13447 TCATTGGCCGTGTGGGCGCGGCGATCGGG 13475 ||||||||||||||||||||||||||||| Sbjct 29 TCATTGGCCGTGTGGGCGCGGCGATCGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189302828369080