Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq256 89.7 4e-13 seq218 86.0 5e-12 >seq256 Length=68436 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || || || || ||| ||| ||| |||| Sbjct 66320 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 66261 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||||| || |||||||| ||| | ||| ||| || Sbjct 66260 GACACTATTGACCAAGTTAAAGCAAAAATTCAA-GACAAAGAAGGAATTCCCCCAGACCA 66202 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | ||||| || || ||||||||| | ||||| | || | | |||||||| Sbjct 66201 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 66142 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||| || ||||| || | ||| | || | || ||||| || Sbjct 66141 CATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGGTAT 66091 >seq218 Length=131350 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || |||||||| || || ||| || | || Sbjct 42241 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 42182 Query 28614 GAGACGGTGG-CCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | | ||||||| | || || ||||| || | ||| |||||| Sbjct 42181 GATACCATAGACCAAGTTAAAGCAAAGATTCAA-GATAAAGAAGGTATCCCCCCAGATCA 42123 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | ||||| || || |||||||| |||||| | || || | || ||||| Sbjct 42122 ACAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAA 42063 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||||||||| ||||| || | ||| | | ||| |||| || || Sbjct 42062 CATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 42012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425346752983284