Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq460 159 4e-34 >seq460 Length=52445 Score = 159 bits (176), Expect = 4e-34 Identities = 321/470 (68%), Gaps = 16/470 (3%) Strand=Plus/Plus Query 138228 CAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCT 138287 |||||||| ||||||| ||| | |||||| ||||| || || | || |||| | | Sbjct 18684 CAGAATGTTTTATGTAGATTCAAATGACAAACATCAGCTCCTATGCCAGCTGGTGTACAT 18743 Query 138288 AGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGA 138347 | || | |||||||||| |||||| ||||| | ||| || || || ||||| | |||| Sbjct 18744 AATCCAATTTGTGCATTTAAATTTGCTCCATCCATATAAACTTGTCCTCCATTTTGATGA 18803 Query 138348 ACGATCTTACATATCTGTCTGATGTTTG-TTTCAAATACACCATGAGTCGATGGATATGT 138406 | || | |||| || | | | | |||||||||||||| || |||||||| || Sbjct 18804 ATTATTTCACATG-CTTTTACAACTCCGCTTTCAAATACACCAAATGTTGATGGATAAGT 18862 Query 138407 AATCATAATACATGAGAGTTCAAATGTATTCA----TGATTGCTTTCTTCTCTAGATCTT 138462 || ||| | | | | | | ||| || | || | || || | || | ||||| Sbjct 18863 AACCATGAAAGCT----GCTAATCTGTCTTTAAATTTGGTAGCCTTTTCTTCCAAATCTT 18918 Query 138463 TGATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGA 138522 | || || | | |||| || ||||| || ||| |||||||| ||| |||||||| Sbjct 18919 TCATATCAAGATCACCATTATTTTCACATTTAACAGGTACAACTTCCATACCTGCCATCG 18978 Query 138523 CTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTAT 138582 | ||| || ||||| || ||||| ||||| | || || | ||| ||||| | |||| Sbjct 18979 CAGCAGATGCGGGATTTGTACCATGAGCTGATACAGGAATTAAACAAACATTACGCTTAT 19038 Query 138583 CATCTCCTGATCCTTGATGATATGCTTGGAT--TGC-TAACAGTCCTGCATACTCACCCT 138639 |||| || | || ||| |||||| || | | ||| ||||| ||| || || | Sbjct 19039 CATCACCCTTTGATTTATGGTATGCTCCAATAATACGTAA---TCCTGTATATTCTCCTT 19095 Query 138640 GTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCA 138689 | | ||| | ||| |||||||| || ||| |||||| ||||| ||| || Sbjct 19096 GAGCTCCAGAGTTTGGTTGTAAAGAAATACCATCAAATCCTGTTATAACA 19145 Score = 111 bits (122), Expect = 2e-19 Identities = 201/292 (69%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 139266 TCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTG 139325 |||| ||||||||| ||||| | ||| |||||| || | ||||||||||| || Sbjct 19879 TCTGGTCCATGATATATAGCATACATAGCAGCCATATTAGCCAAGAGTGCTTGTGCAGTA 19938 Query 139326 CAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAAT 139385 || || ||||| || ||||| |||| ||||||||| || ||||| ||||||| | || Sbjct 19939 CATATATTACTAGTAGCTTTCTCTCGTCTAATATGTTGTTCTCTGGTTTGTAACGACAAA 19998 Query 139386 CTGTATGCAGGATTGCCTTCGCTG--TCCACTGACTGACCTACAATTCTGCCAGGTATCT 139443 | || || ||| || | || ||| || || || | || || || || Sbjct 19999 CGATAAGCTTTATTTCC--AGATGCATCCCGCGAGACCCCAACTAATCGACCTGGCATTC 20056 Query 139444 TTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAG 139503 ||| |||| | |||| | ||||| ||||| ||||| || || || || || | || Sbjct 20057 TTCGCTTAAGTTGGTCTTTGCAAGCAAAAAATGCGGCATGCGGGCCACCATAACCTAAAG 20116 Query 139504 GAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTCACC 139555 ||| |||||| | || || | ||||||||||||||| ||||| || || Sbjct 20117 GAACACCAAAGCGCTGACTATTGCCTACAGCAATATCAGCACCCCATTCTCC 20168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578917369173920