Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1647 152 2e-31 seq37 96.9 1e-14 seq91 95.1 4e-14 seq266 91.5 4e-13 seq1112 86.0 2e-11 >seq1647 Length=14880 Score = 152 bits (168), Expect = 2e-31 Identities = 304/447 (68%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || ||||| ||||| | |||||| ||||| | || | || ||| |||||||| Sbjct 3182 TTTCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATT 3123 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||| ||||| ||||| ||||| || || | | |||| |||||||| Sbjct 3122 CCATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATG 3063 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 | | ||||||||||||| |||||||| |||||| || | ||||| | Sbjct 3062 TTCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAG 3003 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA---CGAACTTAATTGAGGT 156296 || || || || |||||||||| ||| | || ||| | || |||| | ||||||| Sbjct 3002 ATTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAA---AGTTGAGGT 2946 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 | ||||| ||||| || || | || || | ||| ||| |||| |||| | ||||| Sbjct 2945 CTAGGTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATC 2886 Query 156357 TAATCGTATGTCTCCTTA--ATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCC 156414 || ||| || || || | || || | || | |||||||| | | | || | Sbjct 2885 AGATTGTAAGTTTCAATAGCAGCT--TCGATATCATCTCCGTGAATCCCAACCGCTACGC 2828 Query 156415 TCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGC 156474 ||| |||||| || |||||||| ||| |||| | ||||| | ||| || | | Sbjct 2827 GCATAAGCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATC 2768 Query 156475 GTTCCAGAGTTTTAAACCCGAAATAAT 156501 ||| ||||||||||| || ||||||| Sbjct 2767 TTTCAAGAGTTTTAAATCCAAAATAAT 2741 >seq37 Length=134598 Score = 96.9 bits (106), Expect = 1e-14 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 380906 AAGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGCTAAAGGCACAGAATG 380965 ||||| || ||||||||||||| ||| ||||| | || | ||| | | | | Sbjct 88964 AAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGGTA 88905 Query 380966 TAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAATA 381025 | | || ||| | ||||||||| |||||| | ||| ||| ||| ||| | ||| Sbjct 88904 TTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACATA 88845 Query 381026 ACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGATT 381085 |||||| ||| | |||||| |||| ||||| || |||||||||||| || || | Sbjct 88844 GAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGCTGAGT 88785 Query 381086 ATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCA 381128 | | |||| |||| ||||| |||||||| ||||| || || Sbjct 88784 ACATTGATTGCGATACGGATTACACTGGTAAAGGTGTTGATCA 88742 Score = 91.5 bits (100), Expect = 4e-13 Identities = 222/330 (67%), Gaps = 10/330 (3%) Strand=Plus/Minus Query 381223 ATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAATGTTTCGGCTGGTAATAAGTTA 381282 ||||| |||||||| || ||||| || ||||| ||| |||| || | || | ||| Sbjct 88579 ATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATTA 88520 Query 381283 AGTTGTGCTTTATATCAGCGTAGCGGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCT 381342 ||| | | ||||| | |||||||||| || ||||| ||||| || ||||| Sbjct 88519 TCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGCA 88460 Query 381343 TCGTATTCTATGCTTACTCGTTTAATTGCTCATCACACTGGACTAATTGCGGGTGATTTT 381402 ||| |||| | |||| | | ||||||||| || || | | | ||||| ||| Sbjct 88459 AGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATTT 88400 Query 381403 GTTTATTATCTCGGTAATACTCATATATACGACGACCATATTGAGAATTTAAAAGTTCAA 381462 || || | ||| ||||||||||||| | || |||||| | ||||||| |||| Sbjct 88399 ATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCAA 88340 Query 381463 A-AAACCAGGACACCATATGCGTTTCCAACGTTAGA----TATACTAAATACTTACGATA 381517 | | | || |||| | || ||||| |||| || || || || | ||| ||| Sbjct 88339 ATCGAACGTGA-ACCAAAAGCATTTCC-TCGTTTGAAATTTAGACGCAA-AATTA--ATA 88285 Query 381518 ATATTGAAGATTACACGGTTGATGATTTTA 381547 ||||||| |||| | ||||||||||| Sbjct 88284 ATATTGATGATTTTAAATATGATGATTTTA 88255 >seq91 Length=150805 Score = 95.1 bits (104), Expect = 4e-14 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| || ||| || ||||| | || || || || || ||||||||| | Sbjct 78837 AATTTCTTTAAGACGTGGTACACCGAGAGTAACATTT---TTACTCGATACACCAGCATA 78781 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 ||||||||||| ||||| | ||||||| || ||||||||| |||||| |||| | Sbjct 78780 ATGGAAAGTATTTAGAGTCATCTGAGTAGCCGGTTCACCAATAGATTGTGCGGCAACAGT 78721 Query 301935 ACCAACCATTTCTCCTGG 301952 |||||||||||| ||||| Sbjct 78720 ACCAACCATTTCACCTGG 78703 >seq266 Length=67660 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||||| |||||||| || ||||| || || ||||| ||| | | |||| | Sbjct 7341 ATTGTCATACGACTAGGAATAGCGTGTGGATTTATAATAATGTCAGGTGTAATACCATTA 7282 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGTGA 251964 |||| || |||||||| | || | | | || ||||||| ||||| || || || ||| Sbjct 7281 GCAGCAAATGGCATATCTTCTTGATGATAAGTGATTCCAATTGTTCCTTTCTGACCATGA 7222 Query 251965 CGAGAACTGAACTTATCACCAAT 251987 ||| ||| ||||| ||||| Sbjct 7221 CGACTCGCGAATTTATCTCCAAT 7199 >seq1112 Length=36626 Score = 86.0 bits (94), Expect = 2e-11 Identities = 220/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 |||| ||| |||| || |||||||| || | || || | ||| || | | || | | Sbjct 16056 CCTTGATTTTCCAATTGCGTCAATTTCATCCACAAATATTATACAAGGTGCGTGTTTTTT 15997 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 ||| ||||||| || || | ||| | || | |||| ||||||| ||||||| ||||| Sbjct 15996 CGCGTTTGCAAACAAATCACGTACTCTAGACGGACCAACACCAACAAACATTTCAACAAA 15937 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | ||||| | ||||| ||| ||||| || || || | || || Sbjct 15936 TTCAGATCCTGATACACTTAAGAATGGGACACCAGCTTCACCCGCAGTAGCTTTTGCAAG 15877 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || ||||| || || || || || ||| | | || ||||||| ||| || || Sbjct 15876 CAAAGTTTTACCGGTACCTGGAGGACCACTTAAAATGGCACCTTTTGGTATTTTAGCACC 15817 Query 289260 AGCAGACTTATATTTCTCAG--GGCTCTTT-AAAAATTCTACAATTTCCTCAAGTTCATA 289316 || ||| | | ||| || ||||| || |||| |||| |||| | ||| | Sbjct 15816 --CAATCTT-TCATAAGCAGTCGGATCTTTCAAGAATTTAACAAATTCCATTATTTCCTC 15760 Query 289317 TTTTGCCTCATCACAT-CCTGCTACATC 289343 ||| || ||||| ||| || |||||||| Sbjct 15759 TTTGGCTTCATC-CATACCAGCTACATC 15733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471606469605052