Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_021780.1 Length=59454 Score E Sequences producing significant alignments: (Bits) Value seq11023 823 0.0 >seq11023 Length=509 Score = 823 bits (912), Expect = 0.0 Identities = 488/509 (96%), Gaps = 0/509 (0%) Strand=Plus/Minus Query 12802 CATGTTCGCCTTCGCGCAGGGATGGCCGCTTGATGAAGCCCTCGTCGCGCCGGAAGCCGT 12861 ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| || Sbjct 509 CATGTTCGCCTTCGCGCAGGGCTGGCCGCTTAACGAAGCCCTCGTCGCGCCGGAAGCAGT 450 Query 12862 TGCACCGTCGGCCGCCCGGTCATGGCAGTACGAATTCCGGAACGTCAAAGATAGCAACGA 12921 ||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 449 TGCACCGTCGGCCTCCCGGTCATGGCGGTACGAATTCCGGAACGTCAAAGACAGCAACGA 390 Query 12922 TTATTCCGAATTAGTCAAAGTGCTACATGATGCGCTGACACAAGCCGCGTATGGTAAAGG 12981 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 389 TTATTCCGAATTAGTCAAAGTGCTACACGATGCGCTGACGCAAGCCGCGTATGGTAAAGG 330 Query 12982 ACGCGAGCGCCACGCGAATGACCTGCCGTTCAGCCAGCAGCCGATGAACGCCATTTCTGA 13041 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 329 GCGCGAGCGCCACGCCAATGACCTGCCGTTCAGCCAGCAGCCGATGAACGCCATTTCTGA 270 Query 13042 CCTGATCAATAGCCCGCTCGGCTTGGTGTATCAGGTATGCAAAAAGGTCGTCGAGGGTGT 13101 ||||||| |||||||||||||||||| |||||||| ||||| |||||||| || || || Sbjct 269 CCTGATCGGTAGCCCGCTCGGCTTGGTCTATCAGGTGTGCAAGAAGGTCGTAGAAGGCGT 210 Query 13102 CAACCTGCCAACACATGACCAAAGGGTTAGGGAGTTGCTCGGCGTGATCAATTATACTGC 13161 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209 CAACCTGCCAACGCATGACCAAAGGGTTAGGGAGTTGCTCGGCGTGATCAATTATACTGC 150 Query 13162 CGGAATTGTCATCTGGCTAAATCGCCACCAATCAAATCCACCGAAGGAATAAAGGGGCCA 13221 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 149 CGGGATTGTCATCTGGCTAAATCGCCACCAATCAAATCCACCGAAGGAATAAAGGGGCCA 90 Query 13222 CCATGAAGAAGATCGCTGCGCTAACGCTGTTTGTATTGATTATCTGCGGTGTGCTGTTTG 13281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 CCATGAAGAAGATCGCTGCGCTAACGCTGTTTGTATTGATTATCTGCGGTGTGCTGTTTG 30 Query 13282 TCATTGGCCGTGTGGGCGCGGCGATCGGG 13310 ||||||||||||||||||||||||||||| Sbjct 29 TCATTGGCCGTGTGGGCGCGGCGATCGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190105921581632