Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq575 152 5e-32 seq218 143 2e-29 seq1465 141 8e-29 seq256 136 4e-27 seq1647 123 2e-23 seq1727 96.9 3e-15 >seq575 Length=50698 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| || || |||||||| ||||| | ||||| ||| | | Sbjct 23136 ATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGC 23077 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||| || ||||| ||||||||||| || || |||||| Sbjct 23076 GATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAA 23017 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||| || ||||| || |||||| | || || | || || | || ||||| || Sbjct 23016 CAACGTTTAATATTTGCTGGTAAACAGTTAGAAGA-TGGACGTTCACTTTCCGATTACAA 22958 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 |||||||| ||||| ||| |||||||||| | || || ||||| ||||| Sbjct 22957 TATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCGG 22907 >seq218 Length=131350 Score = 143 bits (158), Expect = 2e-29 Identities = 157/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||||||||| ||||||||||| || || || |||||||| || | Sbjct 42241 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 42182 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| |||||||| || || || |||||| Sbjct 42181 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 42122 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| |||||||| || || ||||| | || ||| ||| |||| |||||| ||| Sbjct 42121 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGT---ACATTGTCAGACTAT 42065 Query 24881 AACATTCAAAAGGAATCGACACTACA 24906 ||||||||||| ||||| || || || Sbjct 42064 AACATTCAAAAAGAATCCACTCTCCA 42039 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 42013 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41954 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| |||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 41953 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 41894 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || ||||| | || ||| | | ||||||||||||| Sbjct 41893 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 41834 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 41833 ATTCAAAAAGAATCAACTCTCCA 41811 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 41785 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41726 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| || ||||| || || || |||||| Sbjct 41725 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 41666 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| ||||| ||||| |||| ||| | | | || || ||||| Sbjct 41665 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 41606 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||||||||| || || || Sbjct 41605 ATTCAAAAGGAATCAACTCTCCA 41583 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || ||||| ||||| || ||||| || ||| Sbjct 42469 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 42410 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || || ||| |||||| ||||| || |||||||| ||||| |||||| Sbjct 42409 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 42350 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| || ||||| || || ||||| |||| ||| | | | ||||||||||||| Sbjct 42349 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 42290 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 42289 ATTCAAAAAGAATCAACTCTCCA 42267 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 41557 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 41498 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| || ||||| || ||||| ||||| Sbjct 41497 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 41438 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || ||||| |||| ||| | | | || |||||||| Sbjct 41437 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAAT 41378 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 41377 ATTCAAAAAGAATCTACTCTCCA 41355 >seq1465 Length=43607 Score = 141 bits (156), Expect = 8e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||||||||||||||| || |||||||| || | Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || || ||| ||||| |||||||||||||| || || || ||||| Sbjct 26952 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 26893 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||||||| ||||| |||| ||| | | | |||||||||| || Sbjct 26892 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 26833 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 26832 ATCCAAAAGGAGTCAACTCTCCA 26810 Score = 116 bits (128), Expect = 3e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| || ||||| ||| | | Sbjct 26784 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 26725 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | ||| || || |||||| |||||||||||||| || ||||| |||||| Sbjct 26724 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 26665 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||| | ||||| ||||| || |||||| Sbjct 26664 CAAAGATTGATTTTTGCTGGCAAACAG 26638 >seq256 Length=68436 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| ||||| || ||||| ||||| | ||||| || | || Sbjct 65864 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 65805 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || |||||| |||||| |||||||||||||| || || || ||||| Sbjct 65804 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 65745 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| ||||| || |||||| ||| | | || || || || Sbjct 65744 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 65685 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| || || ||||| || |||||| Sbjct 65684 ATTCAAAAAGAGTCAACACTTCATTTGGTG 65655 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| || ||||| || || || || || ||||| ||| | || Sbjct 66320 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 66261 Query 24764 GACACAGTAGAA-ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | | |||| ||||| || ||||||||||||||||| || || || || Sbjct 66260 GACACTATTGACCAAGTTAAAGCAAAA-ATTCAAGACAAAGAAGGAATTCCCCCAGACCA 66202 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || || || || ||||| || || || | | | | ||||||||||| Sbjct 66201 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 66142 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| || || || || || | || | ||| | |||||||| Sbjct 66141 CATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 66094 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || ||||| || ||||| || || || ||| | | Sbjct 65636 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 65577 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || ||| ||||| ||| || ||||| ||||| || || ||||| ||||| Sbjct 65576 GATACCATTGATCAGGTTAAAACCAAA-ATTCAAGATAAAGAGGGTATCCCTCCAGATCA 65518 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||| || || || || || |||| ||| | | | || |||||||| Sbjct 65517 GCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAA 65458 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| ||||| ||||| || || ||| Sbjct 65457 CATCCAAAAAGAATCAACTCTTCAC 65433 >seq1647 Length=14880 Score = 123 bits (136), Expect = 2e-23 Identities = 114/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 139092 GTTGCACACCGCCACTTCGTCGGGG-TCGCTGTATTCGACAATTTCGGCACACAAATTAC 139150 ||| || || || ||||| || ||| ||| ||||| ||||| || | ||||||||||| Sbjct 3716 GTTACATACAGCAACTTCATCCGGGCTCGAA-TATTCAACAATCTCTGTACACAAATTAC 3658 Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210 |||| ||||| ||||| | |||||||||||| ||| || ||||||| ||||||||| | Sbjct 3657 TACATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTGTAGA 3598 Query 139211 GCATATACGGTGTGCCAGTTTC 139232 ||||||| ||||| || ||||| Sbjct 3597 GCATATATGGTGTACCCGTTTC 3576 >seq1727 Length=26445 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || || || ||| ||||||| ||| || ||||| ||| | | ||||| || ||| | Sbjct 20157 ATACAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCT 20216 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||||| || || ||| | | || ||||| |||||||| | ||||| |||| Sbjct 20217 GATACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAG 20276 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||||||||||||||||| || ||||| ||||| ||| Sbjct 20277 CAACGTTTGATCTTTGCTGGTAAACAACTGGAAGAT 20312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449834636830880