Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq256 122 7e-23 seq575 107 2e-18 seq1465 98.7 8e-16 seq218 89.7 4e-13 >seq256 Length=68436 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| |||||| |||| || ||||||||||| | ||| ||| || | Sbjct 65864 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 65805 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| || |||||| |||||| ||||||||||| | ||| ||||| Sbjct 65804 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 65745 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| || |||||||| || ||||||| |||| | | || ||||| Sbjct 65744 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 65685 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||||||| || || | || ||||| Sbjct 65684 ATTCAAAAAGAGTCAACACTTCATTTGGTG 65655 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || || | |||||||||||||| ||| | || ||| | Sbjct 66092 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 66033 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| ||| |||||| || ||| || || || || | ||| || || Sbjct 66032 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 65973 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| || |||||||| || ||||||| |||| | | || ||||| Sbjct 65972 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 65913 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 65912 ATTCAAAAAGAATCCAC 65896 >seq575 Length=50698 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 110267 TTTAAA-ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA 110325 |||||| |||||||| ||||| ||||| | || || ||||||||||| | ||| || Sbjct 23143 TTTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGA 23084 Query 110326 GCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGT 110385 | |||||| ||| | || ||| | || ||| || |||||||| | ||| Sbjct 23083 AAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCC 23024 Query 110386 GGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGA 110445 |||||||||| | | || | ||| ||||||||| | || |||| | || | | || Sbjct 23023 GGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGA 22964 Query 110446 TTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| |||||||||||||| || || ||| |||| Sbjct 22963 TTACAATATTCAAAAAGAATCAACATTACACTTGGT 22928 >seq1465 Length=43607 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 |||||||| || || || ||| | ||||| ||||| ||||| | ||| ||| ||| | Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | ||| || ||| ||||||| |||||||||||| | ||| |||||| Sbjct 26952 -GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCA 26894 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | || | ||| |||||||| |||| |||| | || || | |||||||| Sbjct 26893 GCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAA 26834 Query 110452 CATTCAAAAAGAATCTAC 110469 || ||||| || || || Sbjct 26833 TATCCAAAAGGAGTCAAC 26816 >seq218 Length=131350 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||||||||| ||||| || | || || |||||||||||| | ||| ||| | | Sbjct 42469 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 42410 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | || || ||| |||||| || || ||||| | || |||||| Sbjct 42409 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 42350 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || |||||||| |||| |||| | || || | ||||| || Sbjct 42349 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 42290 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||||||||| || Sbjct 42289 ATTCAAAAAGAATCAAC 42273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || | ||||| ||||| |||||| | ||| ||| | Sbjct 41557 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 41498 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | ||| || ||| |||||| || || ||||| | || ||||| Sbjct 41497 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 41438 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || |||||||| |||| |||| | | || | ||||||| || Sbjct 41437 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAAT 41378 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||||||||||||||| Sbjct 41377 ATTCAAAAAGAATCTAC 41361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412785267247628