Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq218 150 3e-31 seq575 125 1e-23 seq1465 122 1e-22 seq1592 114 2e-20 seq566 109 9e-19 seq1775 104 4e-17 seq256 102 1e-16 seq1727 93.3 7e-14 seq770 91.5 2e-13 >seq218 Length=131350 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || |||||||||||| |||| || || | Sbjct 42012 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTG 41953 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| || || ||| ||||||||| || || || ||||||| Sbjct 41952 ATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAAC 41893 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||||||||| ||| | | ||||| |||||||||||| Sbjct 41892 AACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAATA 41833 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 41832 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 41785 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | || || ||||| ||||| |||| || || || | Sbjct 42468 TGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATG 42409 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | | || ||| || || ||| ||| ||||| ||||| || ||||||| Sbjct 42408 ATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAAC 42349 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || || |||||||||||| Sbjct 42348 AACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAATA 42289 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 42288 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 42241 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || |||||||| ||| |||| ||||| | Sbjct 42240 TGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTG 42181 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||||||||| || || || ||||||| Sbjct 42180 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAAC 42121 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||||||||| ||| | | || || |||| ||||| | Sbjct 42120 AACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACA 42061 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 42060 TTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 42013 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || |||||||||||| |||| || || | Sbjct 41784 TGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTG 41725 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| || || || ||||||| Sbjct 41724 ATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAAC 41665 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || ||| | || ||||||| Sbjct 41664 AACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATA 41605 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 41604 TTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGGTA 41557 Score = 104 bits (114), Expect = 4e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||||||||| |||| || || | Sbjct 41556 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTG 41497 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| ||||| || ||||| | Sbjct 41496 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGC 41437 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || ||| | |||||||||| Sbjct 41436 AACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAATA 41377 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATA 146263 | ||||||||||| ||| ||||| | ||| | || | | || ||| |||| Sbjct 41376 TTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGTCAATA 41325 >seq575 Length=50698 Score = 125 bits (138), Expect = 1e-23 Identities = 166/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || || ||||| |||||| | || || ||| || || Sbjct 23135 TGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCG 23076 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| | ||||| ||| ||||||||| || || || ||||||| Sbjct 23075 ATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAAC 23016 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACA----GATTAT 146207 || | | || ||||| |||||||| ||||| ||| | ||||| || ||||| Sbjct 23015 AACGTTTAATATTTGCTGGTAAACAGTTAGAAGAT----GGACGTTCACTTTCCGATTAC 22960 Query 146208 AATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||| ||||||||||| || | || || ||| | || ||| | || || Sbjct 22959 AATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 22910 >seq1465 Length=43607 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | || || ||||| |||||| |||| ||||| | | | Sbjct 27011 TGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA- 26953 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || ||| || || ||| |||||||||||||| || ||||| Sbjct 26952 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 26893 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| ||||||||||| || ||| | || || ||||||| ||| Sbjct 26892 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 26833 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| || || ||| ||||| | || | || |||||||| |||| Sbjct 26832 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGTA 26784 >seq1592 Length=32188 Score = 114 bits (126), Expect = 2e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 ||||||||||| |||||||| | || ||||| || || || ||||| ||| | | Sbjct 12618 AAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACAATTGATCAA 12559 Query 146106 GTAAAAAATAAAATACAACTTAAA--GAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 |||||| ||||| ||| ||| ||||| || ||||| |||||||||||| | |||| Sbjct 12558 TTAAAAACAAAAATT--ACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAATTT 12501 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 |||| ||||| ||| | || ||| | || |||| ||||| |||||| || | Sbjct 12500 TTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGTTGAGT 12441 Query 146224 CGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || | |||||||||||| ||||||| || || Sbjct 12440 CCACGCTACATTTAGTATTAAGATTAAGGGGTGG 12407 >seq566 Length=43303 Score = 109 bits (120), Expect = 9e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 146129 AGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAA 146188 |||||| || || || ||||||||| | | || | || ||||||||| | || ||| | Sbjct 34370 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 34429 Query 146189 TAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 | | || ||| |||||||||||||||| | ||||| ||| | |||||||||||| |||| Sbjct 34430 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 34489 Query 146249 AAGAGGAGGT 146258 |||||| ||| Sbjct 34490 AAGAGGTGGT 34499 >seq1775 Length=41804 Score = 104 bits (114), Expect = 4e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||||||| | || |||||||| || ||||| || || | || || | || ||| Sbjct 13821 CAAATATTCGTTAATACATTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 13762 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || ||| | || ||||| | ||||| || ||||||||| || || || ||||||||| Sbjct 13761 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAGGGATACCTCCAGATCAACAA 13702 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 ||| | ||||||| |||| | | || ||| | |||||| | ||||| || ||| Sbjct 13701 AGATTAGTTTTTGCTGGTATGTTACTTGAAGATGGCCGTACGTTATCGGATTACAAGATA 13642 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 ||||| | || || || ||| | ||||| || ||| || ||| Sbjct 13641 AAAAAACATTCCACAATACATCTGGTATTGAGACTAATTGGTGGT 13597 >seq256 Length=68436 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || |||||||| | || || || || ||||| |||| || ||| ||| Sbjct 65635 TGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT- 65577 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || |||| ||||| ||| |||||| || || || || ||||| Sbjct 65576 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 65517 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | ||||| || ||||| ||||| || ||| | | || | | |||||||| Sbjct 65516 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 65457 Query 146211 ATACAAAAAGAATCGACT 146228 || ||||||||||| ||| Sbjct 65456 ATCCAAAAAGAATCAACT 65439 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| ||| | || || ||||| || || | || ||||| | Sbjct 66091 TGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGG 66032 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| ||||| ||| ||| || || || || || || || | Sbjct 66031 ATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGC 65972 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || ||||||||| | || ||| |||| | | || || |||| Sbjct 65971 AACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATA 65912 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| ||| | ||| Sbjct 65911 TTCAAAAAGAATCCACTCTTCAT 65889 >seq1727 Length=26445 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||| || | ||||| ||| || ||||||||| | ||||| || || ||| Sbjct 20160 CAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCTGAT 20219 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || || || | || ||||| | ||| ||| ||||||||||| ||| || |||| ||| Sbjct 20220 ACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAGCAA 20279 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 | | || ||||| ||||||||| | || ||||| || || ||| |||||||||| Sbjct 20280 CGTTTGATCTTTGCTGGTAAACAACTGGAAGATAAACATACTTTGACACATTATAATATT 20339 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||| ||| | ||| | || | || ||||||| |||| Sbjct 20340 AGGGATAAATCAACTCTTCATCTCGTGCTCCGTCTAAGAGGTGGTA 20385 >seq770 Length=40003 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 |||||||| || ||||||||| ||| | ||| | || | ||| |||||| | | Sbjct 15068 AAAACATTGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGCGACACTATTGATATG 15127 Query 146106 GTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTT 146165 | ||| ||| | | |||||||||||||| || || || ||| | | |||||| Sbjct 15128 ATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGCAACGTATTATTTTT 15187 Query 146166 GCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCG 146225 || ||||| ||||| || ||| | ||| ||| ||||||||||||| ||| |||| || Sbjct 15188 GCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTATAATATTCAAGAAGAGTCT 15247 Query 146226 ACTATCCATTTAGTA 146240 || | ||| | ||| Sbjct 15248 ACGTTGCATCTTGTA 15262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786056376012320