Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq256 149 5e-31 seq218 147 2e-30 seq575 134 1e-26 seq1465 132 4e-26 seq1727 95.1 9e-15 seq1775 91.5 1e-13 >seq256 Length=68436 Score = 149 bits (164), Expect = 5e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || || | |||||| || || |||||||||||||||||||| | || ||| ||| Sbjct 66106 CGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCG 66165 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||||||||| | || | | |||||| || || ||||| || |||||| Sbjct 66166 TCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTG 66225 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||||| ||| || || | |||||| ||| ||| |||||||| || || Sbjct 66226 TCTTG-AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGAT 66284 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||||||||| || || ||||| Sbjct 66285 TGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 66320 Score = 141 bits (156), Expect = 7e-29 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || || ||||||||||| || || || | || ||| || Sbjct 65649 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 65708 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| || || | || | | ||||||||| || |||||||| ||||| Sbjct 65709 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 65768 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| |||| ||| || || | || || ||| || ||||| | ||| | Sbjct 65769 GTCTTG-AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAA 65827 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| ||||||| ||||||||||| || ||||| Sbjct 65828 TGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || ||||||||||| ||||||||||||| || || ||| Sbjct 65421 ACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACC 65480 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | ||||| | ||||||||| || || ||||||||||| Sbjct 65481 ATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTT 65540 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| || || | || ||||| ||| || ||||| || | Sbjct 65541 ATCTTG-AATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAA 65599 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| | ||||| ||||| || ||||| Sbjct 65600 TCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 65636 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| ||||||||||||||||| || || || | || ||| || Sbjct 65877 ACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCC 65936 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | || | | |||||| || || || |||||||| || Sbjct 65937 ATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTT 65996 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| |||||| | ||| || || | || || || ||||| || | || | Sbjct 65997 ATCTTG-AATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGA 66055 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || | || || || || || ||||| Sbjct 66056 TGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 >seq218 Length=131350 Score = 147 bits (162), Expect = 2e-30 Identities = 173/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || || ||||| || || | ||| || ||||||||||||||||||||||| || | | Sbjct 42015 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 42074 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| || ||| ||| || | |||||| ||||| | ||||| | ||| ||||| || || Sbjct 42075 AAT-GTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGG 42133 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||| ||||| ||||| ||| |||| ||| || |||| || ||||| |||| Sbjct 42134 GATACCTTCTTTATCTTG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTA 42192 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||| || ||||| || || | |||||||| || || ||||| Sbjct 42193 CTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| || |||| | ||| || || | ||| || || |||||||||||||| |||||||| Sbjct 41327 TTGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATC 41386 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 || | || || ||| || | |||||| ||||| | ||||| | ||||||||| || Sbjct 41387 CGATAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGG 41446 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 |||||||| || || ||||| ||| |||| ||| || |||| || ||||| | Sbjct 41447 AGGAATACCTTCCTTATCTTG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACT 41505 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || || ||||| || || | ||| || || || || ||||| Sbjct 41506 CAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 41557 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || || | ||| || || |||||||||||||| |||||||| | Sbjct 41787 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 41846 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || | |||||| ||||| | ||||| | ||| ||||| || || Sbjct 41847 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 41906 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| ||| || | ||| || |||| || ||||| || || Sbjct 41907 ATACCTTCTTTATCTTG-AATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGAC 41965 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || ||||| || || | ||| || || || || ||||| Sbjct 41966 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || || | ||| || || |||||||||||||| |||||||| | Sbjct 42243 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 42302 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| ||||| | || || | ||| ||||| || ||| Sbjct 42303 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 42362 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| ||| |||| ||| || || | ||| ||| || || Sbjct 42363 ATTCCTTCCTTATCTTG-AATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGAC 42421 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || ||||| ||||| | ||| || || ||||| ||||| Sbjct 42422 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 42469 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || || | ||| || || ||||| |||||||| ||||| |||| Sbjct 41559 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 41618 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| || || | ||||| | ||| ||||| || || Sbjct 41619 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 41678 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || || ||||| ||| |||| ||| || |||| || ||||| || || Sbjct 41679 ATACCTTCCTTATCTTG-AATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 41737 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| || ||||| || || | || || || || || ||||| Sbjct 41738 TTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 >seq575 Length=50698 Score = 134 bits (148), Expect = 1e-26 Identities = 166/226 (73%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| || ||||| || | || |||||||||||||| || ||||| | || | || Sbjct 22919 AAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGT 22978 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||||| |||||| |||| || | ||| |||||||| || || || ||| Sbjct 22979 CCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCT 23038 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || ||||| | ||||| |||||| | || | || || | ||| ||||| | ||| Sbjct 23039 TTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTA 23098 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT-TTTAAAA 29793 || ||||| ||||| | ||||||||||| || ||||| ||||||| Sbjct 23099 ATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAAA 23144 >seq1465 Length=43607 Score = 132 bits (146), Expect = 4e-26 Identities = 119/147 (81%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700 |||||||||||| | ||||||||||| ||||| || || ||||| ||||||||||| ||| Sbjct 26639 TGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTG-AAT 26697 Query 29701 TTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 ||||| ||||| ||| | || |||||| ||| ||||||||||| |||||||| || Sbjct 26698 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 26757 Query 29760 AGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||| |||||||| Sbjct 26758 GGTGAGGGTCTTTACAAAAATCTGCAT 26784 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| ||||| | ||| || || || || ||||| || || ||||| | Sbjct 26786 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 26845 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || | |||||| || ||| | ||||| | |||||||||||| ||| Sbjct 26846 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 26905 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | ||| || || | || || || ||||| Sbjct 26906 ATGCCTTCTTTGTCTTG-AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 26964 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| |||||||| || || | || ||||| || || ||||| Sbjct 26965 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq1727 Length=26445 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| ||||| | |||||| || |||| | ||| ||||||| | Sbjct 20383 CCACCTCTTAGACGGAGCACGAGATGAAGAGTTGATTTATCCCTAATATTATAATGTGTC 20324 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || |||||||| |||||| | ||||| | |||||||| || ||| Sbjct 20323 AAAGTATGTTTATCTTCCAGTTGTTTACCAGCAAAGATCAAACGTTGCTGATTTGGAGGA 20264 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 | || ||||| ||||| | | | | ||| || || || || ||||| || ||| Sbjct 20263 GTGCCTTCTTTATCTTGAATTATGTTTTTCACTTCTTTAACTGTATCAGAGGCATCAACT 20204 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || ||||||||| ||| ||||||||||| || || || Sbjct 20203 TCAATGGCAATTGTTTTGCCACTTACAGTTTTAACAAAAATTTGTAT 20157 >seq1775 Length=41804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||| ||| | ||||| | ||||| || || ||||||| | || || ||| || Sbjct 13616 ACCAGATGTATTGTGGAATGTTTTTTTATCTTGTAATCCGATAACGTACGGCCATCTTCA 13675 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 ||| | |||||| | | |||||||| ||||| || || || || ||||| || || Sbjct 13676 AGTAACATACCAGCAAAAACTAATCTTTGTTGATCTGGAGGTATCCCTTCTTTATCCTGA 13735 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGT--CAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 | ||||| ||| | | || || | ||| || || | || ||| || |||||||||| Sbjct 13736 ATTTTTTCTTTTA--GGTTATAAATTGTATCACTAAAATTTAATTCTAGTGTTATAGTTT 13793 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTG 29783 | |||||||| || ||||| ||||| || Sbjct 13794 TACCAGTTAATGTATTAACGAATATTTG 13821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385166636358636