Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq7916 237 5e-57 seq5091 172 2e-37 seq7860 120 1e-21 seq3016 114 4e-20 >seq7916 Length=797 Score = 237 bits (262), Expect = 5e-57 Identities = 334/465 (72%), Gaps = 8/465 (2%) Strand=Plus/Minus Query 201734 GCACAAGAAATTGTTCCATACATTATTGATCAAGCTAATGAATTTTTAG---GTAATGGT 201790 || ||||| ||||||||||| |||||||| |||| ||||||||| | || || Sbjct 796 GCTCAAGAGATTGTTCCATATATTATTGAAAAAGCAAATGAATTTCTGAACCGTGATCAA 737 Query 201791 GGGACAGTTGTAATCGCTATGGATTCTCATCAAGAAAATGATCCTCACTTTGAACTCTGG 201850 | | ||||| || || |||||| |||||||||||||||| || ||||||||||| ||| Sbjct 736 GTG---GTTGTCATTGCAATGGATGCTCATCAAGAAAATGACCCACACTTTGAACTTTGG 680 Query 201851 CCAGCGCATAACATAATTGGCACTAAAGGCCATGAATTATATGGTGATTTAAATAAATGG 201910 ||||||||||| | | || ||| ||||| | | |||||||| | | | ||| Sbjct 679 CCAGCGCATAATGTGGTAGGTACTTTCGGCCAACAGCTTTATGGTGACCTTATGACTTGG 620 Query 201911 TACAAACCA-ATGAAATTACACCCAAATGTAATTGTATTACCTAAAACAGACTACAATGC 201969 || || | ||||| | |||| || || | || ||| | | |||||||| Sbjct 619 TATCAAGAACATGAAGCAAATTCCAAC-GTTATGATGCAGCCGAAATCGAATTACAATGC 561 Query 201970 TTTCTTTAAAACTAGTTTGGCAACGAAATTACATGCTCGCGGAATTGATAAAGTACACGT 202029 |||||||| || | || || ||||| | ||| | | |||| ||||| || || Sbjct 560 GTTCTTTAATACGAACTTAGCTGAAAAATTGCGTGCACTTGATGTTGAAAAAGTCCATGT 501 Query 202030 TGTTGGTGTATGTACTGATATTTGCGATTTCTTAACAATTGCTGGTGCAAGCGCCGAAGG 202089 ||| ||||| || || ||||||||||| |||||||| ||||||||||| || ||||| Sbjct 500 TGTGGGTGTTTGCACGGATATTTGCGACTTCTTAACCGTTGCTGGTGCAGATGCAGAAGG 441 Query 202090 TTTCAAAACAGCTATTCACAAACGTGGAGCAGCAACATTTACAGATAAAGGCGAAATGTT 202149 || ||||| ||||| |||||| | ||| ||||||| || |||||| ||| |||| || Sbjct 440 ATTTAAAACCGCTATCCACAAAAGAGGAACAGCAACCTTCACAGATTTAGGAGAAACATT 381 Query 202150 TATCGAACATATGAAATTATGCTTCCATACTGAAATAATTGAATA 202194 | || | ||||||||| |||||| |||||| ||| | || || Sbjct 380 TGTCAATCATATGAAAACATGCTTTTTTACTGAGATAGTAGAGTA 336 >seq5091 Length=1544 Score = 172 bits (190), Expect = 2e-37 Identities = 314/449 (70%), Gaps = 18/449 (4%) Strand=Plus/Plus Query 19907 CCTGGTAAGAGAACTCCAGATGGTGAAAGAGAATGGAGCTTTAACAAT-AAGTTAGTTGT 19965 ||||| || | |||||||||| |||| | ||||||| ||||| || ||||| | | Sbjct 3 CCTGGAAAACGGACTCCAGATGATGAACGTGAATGGACTTTTAATGATCAAGTTGCTCGG 62 Query 19966 TGCTTTCGTTAA--CACTATGAATCAGTATGAGAATGTTACTGTTAAGCGTTATGATGAT 20023 || || | || || || |||| | ||||| |||| || | || || | ||||||| Sbjct 63 -GCATTTGCAAAAGCATTA-GAATTA-TATGATGATGTAACACTCAAACGATTTGATGAT 119 Query 20024 CCAACGGGTAAAACTGACGTGCCTTTAATTACTCGTACTAATGGGGCAAACGCTTGGGGA 20083 ||||| || || ||||| || ||| | | | || |||| ||||| ||||||| Sbjct 120 CCAACAGGAGAAGAAGACGTACCGTTAGATGCAAGGACGGATGGTGCAAATTCTTGGGGT 179 Query 20084 GCAAACATCTACATTTCATTCCACCACAACGCTAATACTGCTAAA---TGGGGTACTTGG 20140 ||| | ||| || || ||||| || |||||| | | | ||| |||||||| Sbjct 180 GCAGATTACTATATCTCTTTCCATCATAACGCTCTTTCAGGTAATGGGTGGGGTACACAT 239 Query 20141 ACAGGTGTTGAAACTT-TCTACTATCCAGGTTCTACGACT-----GGATTGAACTTAGCT 20194 || ||||| ||||||| | || ||| ||| | || || | || || || ||||| Sbjct 240 ACTGGTGTAGAAACTTATGTA-TATACAGATCCT--GATTCAGAAGGTTTAAAATTAGCA 296 Query 20195 AAAGCTATTCACCCAGCAGTTGTTCAATCTTATGGATTGAAAGATAGAGGCGTTAAGTCT 20254 |||| ||||| || || ||||| || | ||||| || | || ||||| |||| | Sbjct 297 GAAGCAATTCATCCTGCTGTTGTGAAAGCATATGGGTTAAGTGACAGAGGGATTAAACGT 356 Query 20255 GGAAATCTTCACATCGTTAGAGAAACAAAAATGCCAGCTATTTTAATCGAAGGTGGATTC 20314 | ||| | ||||| || ||||||| |||||| || || ||||| |||||||| ||| Sbjct 357 GCAAACTTACACATTGTGCGAGAAACGTTAATGCCGGCAATATTAATTGAAGGTGGTTTC 416 Query 20315 ATGGATTCTACTATCGATATTAAAAAACT 20343 |||||||||| ||| ||||| |||||||| Sbjct 417 ATGGATTCTAGTATTGATATAAAAAAACT 445 >seq7860 Length=804 Score = 120 bits (132), Expect = 1e-21 Identities = 216/316 (68%), Gaps = 25/316 (8%) Strand=Plus/Minus Query 181032 GAAAAATTGCGATATGATAAAATTATTTTCATGTGTGATGCTGATGTCGATGGTTCTCAT 181091 |||||| || || ||||||||||| | ||| |||||||||||| |||||| | ||| Sbjct 691 GAAAAAGCTCGCTACCATAAAATTATTATTATGACTGATGCTGATGTAGATGGTGCACAT 632 Query 181092 ATTGAAGCACTACTACTAACGTTATTCTATAATTATATGAGACCATTAATTGAAAAAGGG 181151 ||| | |||| ||||||| |||| || ||||||||| ||||||||| | | Sbjct 631 ATTCGTATATTACTTTTAACGTTCTTCTTCCGTTTTATGAGACCGTTAATTGAAGCAAGA 572 Query 181152 CATGTATATGCGGCTCAGCCACCATTATATCGAGT------AGTTAAAAAGAACGAATCA 181205 |||| ||||| ||||| || ||| | || | | | || |||| | |||| Sbjct 571 TATGTCTATGCCGCTCAACCGCCACTTTACCAAATCAAACAAGGTAAACATGTGGAAT-- 514 Query 181206 ATTTACCTTAAAGATGATCATGAGTTAAAAGA-----------GTATACTAAGAAACATC 181254 ||| | | |||| | |||||| |||| || ||| | |||| | Sbjct 513 ATT----GTTATTCTGATGAAGAGTTACAAGAAATTTTAGAACGTTTACCACAAAAC--C 460 Query 181255 CAAACGCTGAAGTTCAACGCTTCAAAGGTCTTGGTGAAATGAACGCAGATCAACTTTGGG 181314 | || ||| | | ||||| | |||||| | || |||||||| ||||| || ||||||| Sbjct 459 CGAAACCTGCAATCCAACGATATAAAGGTTTAGGGGAAATGAATGCAGAACAGCTTTGGG 400 Query 181315 AAACAACAATGGATCC 181330 |||||||||||||||| Sbjct 399 AAACAACAATGGATCC 384 >seq3016 Length=3907 Score = 114 bits (126), Expect = 4e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 58659 AATGGCTCCGTGGTGTAGCGGTTAACACGCCTGCCTGTCACGTAGGAGATCGCCGGTTCG 58718 ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 759 AATGGTCCCGTGGTGTAGCGGTTAACATGCCTGCCTGTCACGCAGGAGATCGCCGGTTCG 818 Query 58719 AATCCGGTCGGGGCCGCCATT 58739 | ||||||||| |||||||| Sbjct 819 ATCCCGGTCGGGACCGCCATT 839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591682042443008