Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_024207.1 Length=159656 Score E Sequences producing significant alignments: (Bits) Value seq9243 86.0 6e-12 >seq9243 Length=648 Score = 86.0 bits (94), Expect = 6e-12 Identities = 193/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 18991 ACAGGCGCTTTAATAGCTTTGTGCGGGTTATAATCTACAATTTCAAAGTCTTC-AATCCC 19049 ||||| ||||| || | | || |||| ||| ||| |||||| |||||||| ||| | Sbjct 255 ACAGGTGCTTTGATCGATGGATGTGGGTCATATTCTTCAATTTTCAAGTCTTCTAATTCA 314 Query 19050 ATAATCTTCTAAATTATCTTTCTTATTT---TTAATCACCAGTTTAGGTAATTTTCTCGG 19106 ||| | ||||| |||| || | | || || |||| ||| || || | ||| Sbjct 315 ATA---TCGAAAATTGACTTT-TTCTCTGAATTTATTTTTAGTTGAGGCAAGTTACGCGG 370 Query 19107 CTCGTTTAATAGCTGCTCTTTCGCTTGCTCGATATGGTTAAGGTATAAATGGACGTCTCC 19166 ||| |||||| || || ||||||| | ||| || | || | ||| ||||| Sbjct 371 TTCGCGACTTAGCTGTTCATTTACTTGCTCTAAATGATTTAAATAGATATGTGTATCTCC 430 Query 19167 ACCATTGTAAATGAGAGAACCTACTTCTAATCCGCATTCTAGTGCGATTAAATGAAGCAA 19226 | | | || || ||| || ||||| || ||||| |||| |||||||| || Sbjct 431 AAAGCTATGAACGAATTCACCAACATCTAACCCACATTCATGTGCAATTAAATGTGTTAA 490 Query 19227 CAGAGCATAACTAGCGATATTGAAAGCTAGTCCTAAAAATCCATCG 19272 || |||||| |||||||||||| | | |||||||||| ||||| Sbjct 491 CAATGCATAAGAAGCGATATTGAACGGCACTCCTAAAAATACATCG 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510699717570560