Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1647 190 5e-43 seq54 118 3e-21 seq91 95.1 3e-14 seq339 93.3 1e-13 seq106 89.7 1e-12 >seq1647 Length=14880 Score = 190 bits (210), Expect = 5e-43 Identities = 436/652 (67%), Gaps = 7/652 (1%) Strand=Plus/Plus Query 110258 AAAACTAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAA 110317 |||||| ||| || ||| |||| | | || ||| | | | |||||||| || || Sbjct 2697 AAAACTTAATTCTACGATCATTTATGATAGAGATTATAAATATAATTATTTTGGATTTAA 2756 Query 110318 AACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACA 110377 |||||||||| | ||||| | | || | ||| | | || ||||| ||||| Sbjct 2757 AACTCTTGAAAGATCTTATCTTTTACGAATAGGTGGAAAAGTTGCCGAGCGTCCCCAACA 2816 Query 110378 CATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATG 110437 ||| || | || || ||| |||| ||||| ||| ||||||| |||||| ||||||| Sbjct 2817 TATGCTTATGCGCGTAGCGGTTGGGATTCACGGAGATGATATCGAAGCTGCTATTGAAAC 2876 Query 110438 TTATGATGT-AT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCA 110495 ||| || | || | || ||||| || ||| || |||| || | ||||| || Sbjct 2877 TTACAATCTGATGTCAG--AAAAGTTCTTTACTCACGCATCTCCGACTTTGTTTAATGCT 2934 Query 110496 GGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATT 110555 || || | || ||| | | ||| |||||| || || || |||||||| || Sbjct 2935 GGCACACCTAGACCTCAACTTTCGAGTTGTTTTCTTTTAACTATGAAAGATGATTCAATA 2994 Query 110556 GAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATT 110615 || || || |||||| || | ||| | || | |||||||| | | || || ||| Sbjct 2995 GAGGGAATCTATGATACTTTGAAAACATGCGCAATGATTTCTAAGACTGCAGGTGGTATT 3054 Query 110616 GGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCT 110675 ||| | || ||||| | ||||| | | |||| | |||| || | | || ||| | Sbjct 3055 GGTGTGAACATTCATAACATTCGTGCGACAGGATCTTATATTGCTGGAACAAATGGTTAT 3114 Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| |||| || |||| |||||| | || | || | ||||| | |||||| ||||| Sbjct 3115 TCAAATGGAATTATTCCCATGTTACGCGTTTATAATAATACTGCTAGATATGTTGATCAA 3174 Query 110736 GGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 || || || | | | ||| | |||||||| ||| | ||| | |||||| | || || Sbjct 3175 GGAGGAAACAAACGTCCGGGCGCGTTTGCTATTTATTTAGAAACGTGGCATCCTGACATT 3234 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 ||||| || | || | |||||| ||| |||||| | ||||| |||||| Sbjct 3235 TTTGATTTTATGGATTTAAAAAAAAATACTGGAAAAGAAGAAGTTCGTGCACGGGATTTA 3294 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG 110904 ||||||||| | ||| |||| ||| | || |||||| | ||| || ||||| Sbjct 3295 TTTTATGCACTTTGGGTTTCGGATCTTTTTATGAAAAGGGTTGAATCAAATG 3346 >seq54 Length=215934 Score = 118 bits (130), Expect = 3e-21 Identities = 329/499 (66%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 131800 AAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAG 131859 ||| ||||| || |||||| || ||||||| ||| | || ||| || | | Sbjct 101840 AAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATCTTCATTTGCTGAACG 101899 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 |||||||| ||||| ||||||||| ||||||||||| || |||||| | ||||| Sbjct 101900 TCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTT 101959 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 |||| | ||||| | ||| ||||||| ||| | | || ||||| || | || || | Sbjct 101960 TTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCG 102019 Query 131980 AGATGAAGCATTGCATACTGAATTTGC---TATATTAATCTATAGAAAATTTGCTGATAA 132036 |||||||| ||||||| ||| ||||| | | ||| || | | || | | | Sbjct 102020 AGATGAAGGATTGCATTGTGATTTTGCATGTCTCTTATTCACT--CATCTTCGTGCACGA 102077 Query 132037 ACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTT 132096 || | |||| | | | || ||||| ||||| ||| || || | || || Sbjct 102078 CCTCCAACAAAA-ACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAATT 102136 Query 132097 TATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTA 132156 | | |||||||| || || ||||| ||||| ||||| || | | ||||| | || Sbjct 102137 TTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAATA 102196 Query 132157 CATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATT-TATAACA 132215 |||||||| || |||||| | ||| | |||||| | ||| ||| ||||| Sbjct 102197 TATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGG-TGGAGCAAAATTGTATAATT 102255 Query 132216 CCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCG 132275 | | || || | | | ||||| | |||| | |||||||||| || ||||| | Sbjct 102256 CAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAGGTAAAACAAATTTCTTTG 102315 Query 132276 AAAGTCGTGTATCTGAGTA 132294 ||| || ||||| || || Sbjct 102316 AAAAACGCGTATCAGATTA 102334 >seq91 Length=150805 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 304894 TCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCATCTCAAAGA 304951 |||| |||||| | ||||||||||| || ||||| || | || |||| |||| | Sbjct 76273 TCATTGTGCAACTTATATGGATAATGAGATGGCTGGTCAACCA--CAAGCATTACAAAAA 76330 Query 304952 TCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGA 305011 ||||| ||||||||||| || || ||| | || |||||||| || ||| |||| Sbjct 76331 TCTGGTAGACCTTTAAAATCAATCAGAGCACGTCTCAAGGGTAAAGAAGGACGTCTTCGT 76390 Query 305012 GGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCT 305071 || ||||||||||| |||||||| || ||| ||| | | || || || ||| | Sbjct 76391 GGAAATCTAATGGGTAAACGTGTAGACTTTTCTGCTCGTACAGTCATTACGGGAGATCCG 76450 Query 305072 CAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCA 305131 | || | ||||| | |||||||||| || |||| ||| |||| ||||| Sbjct 76451 AATATATCAGTAGATGAAGTTGGAGTTCCAAAAAGTATAGCTTCAAATTTAACTTTTCCT 76510 Query 305132 GAGAAAGT 305139 || | ||| Sbjct 76511 GAAATAGT 76518 >seq339 Length=85985 Score = 93.3 bits (102), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||||| || |||| | ||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 75015 ACTTTTCGTTTTAATGAATGTGTTTGTAGTCCTTATAATGCAGATTTTGATGGTGATGAA 75074 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | |||||||||||| Sbjct 75075 ATGAATCTTCATGTACCTCAA 75095 >seq106 Length=96187 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 |||||| | ||||| ||||||||||| || || ||| |||| |||||| ||| || Sbjct 10330 GGTATTGCTAAACTGGATGATGCAAATAATGCCGGCGGTAAAAAATGTCAAGATTGTACT 10271 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 ||| | |||||||| || |||||||| | || || |||| || || ||| | || Sbjct 10270 TTAATCCTTACTGAAGGCGATTCTGCAAAGGCTTTGGCAGTTGCCGGATTTTCTATAGTT 10211 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241 |||||||| || ||||| || || || | | || ||| || | |||| | | ||| Sbjct 10210 GGTCGTGACAATTATGGAGTTTTCCCGCTTCGTGGGAAATTATTAAATGTTAGGGAT 10154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186642553187356