Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1465 129 4e-25 seq256 125 5e-24 seq575 107 1e-18 seq218 93.3 3e-14 >seq1465 Length=43607 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | ||| | ||| ||||| ||| ||||| || |||||||| || Sbjct 26785 ACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGA 26844 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || ||||||||||| |||||||| ||||| || |||||||| | || Sbjct 26845 CAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 26904 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| ||| | || ||| | ||| | ||| || || || | Sbjct 26905 AATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTA 26963 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || | || || || || || |||||| Sbjct 26964 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 27013 >seq256 Length=68436 Score = 125 bits (138), Expect = 5e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 |||||||| ||||| ||||| || || || || | || |||||||| || || || ||| Sbjct 65446 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 65505 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||| ||||||||| | || | ||| ||||| || |||||| |||| ||| | Sbjct 65506 ATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTT-GGTTTTAACCTG 65564 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||| || |||||| || |||| || ||||| ||||| || | |||||||| Sbjct 65565 ATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTAC 65624 Query 33738 AAAGATCTGCATA 33750 ||| || |||||| Sbjct 65625 AAAAATTTGCATA 65637 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || || ||||||||| || ||||| || || Sbjct 65637 ACCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGA 65696 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | |||||| ||||| ||||| | ||| ||||||||| | || Sbjct 65697 AAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 65756 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || || || || | || | ||| ||| || || | Sbjct 65757 AATACCTTCTTTGTCTTGAATCTT-TGCTTTTACTTGATCGATGGTATCGGAAGACTCAA 65815 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || |||| ||||| ||||| || |||||| Sbjct 65816 CTTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 65865 Score = 114 bits (126), Expect = 8e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||||||||| ||||| ||||| || || || || |||| || | ||| Sbjct 66117 ATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTG 66176 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 ||| || || ||||| | ||| ||||| ||| | || | ||||||||||| |||||| Sbjct 66177 TTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTT 66236 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 || || ||| | ||| | |||||| ||||| || |||| ||||| || || || | Sbjct 66237 -TGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGG 66295 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | ||||| || ||||| ||||| Sbjct 66296 TAAGGGTTTTAACGAAGATTTGCAT 66320 >seq575 Length=50698 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | ||||| |||| || |||||||| || ||||||||||| Sbjct 22910 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 22969 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||| ||| | || || || ||||| || ||||| || ||||| || ||||| | || Sbjct 22970 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 23029 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | |||||||| || |||||| | ||| | || | ||| ||||| ||| || Sbjct 23030 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 23089 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| || | ||||| ||||| || ||||| Sbjct 23090 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 23136 >seq218 Length=131350 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| ||||| |||||||| || || ||||| || Sbjct 41330 ACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGA 41389 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || || || ||||| || ||||||||| | || Sbjct 41390 TAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 41449 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| || || || ||| | ||| | ||| || || || | Sbjct 41450 AATACCTTCCTTATCTTGAATCTT-TGCTTTAACTTGGTCTATGGTATCAGAGGACTCAA 41508 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || | || || || || || |||||| Sbjct 41509 CTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 41558 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | || | ||| ||||| || ||||| || || || || || Sbjct 41558 ACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGA 41617 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| ||||| || ||||| || || |||||| | || Sbjct 41618 TAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGG 41677 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| || || || ||| | || | ||| || || || | Sbjct 41678 GATACCTTCCTTATCTTGAATCTT-TGCTTTAACTTGATCTATGGTATCAGAGGACTCGA 41736 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || | || || || || || |||||| Sbjct 41737 CTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCATA 41786 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | || | ||| ||||| |||||||| || || ||||| || Sbjct 42242 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGA 42301 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || || || || || || || |||||| | || Sbjct 42302 CAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGG 42361 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || || ||| | || | || || | || || | Sbjct 42362 AATTCCTTCCTTATCTTGAATCTT-TGCTTTAACTTGATCAATAGTATCATTGGACTCGA 42420 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || || | || || || || || |||||| Sbjct 42421 CTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 42470 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | || | ||| ||||| |||||| || ||||||||||| || Sbjct 42470 ACCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGA 42529 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 | | ||| |||| ||||| |||||||||||||| || || || || ||||| Sbjct 42530 TAAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATC 42583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328659147928320