Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq256 109 1e-18 seq1465 107 5e-18 seq575 93.3 1e-13 seq218 93.3 1e-13 >seq256 Length=68436 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || ||||| | ||||| ||| ||| ||||| | || | Sbjct 66305 AAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGACACTATTGACCAA 66246 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| |||||||| |||||||||||| || ||| ||| | ||||| || Sbjct 66245 GTTAAAGCAAAA-ATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAACGTCTTATTTT 66187 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || | ||||| || | || | | ||||| ||| | || |||||||| Sbjct 66186 CGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAACATTCAAAAAGAGTC 66127 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || | ||||||| Sbjct 66126 AACTCTTCATCTAGTACTTCGACTTCG 66100 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| || ||||||||||| || ||| || || |||| | Sbjct 65849 AAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCCGATACCATCGATCAA 65790 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||||||||| |||||||| ||| || || ||| | || || ||| Sbjct 65789 GTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAGCAACGTCTCATTTTC 65730 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | || |||||| | || | | || ||||| | || |||||||| Sbjct 65729 GCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAATATTCAAAAAGAGTCA 65670 Query 206365 ACTCTTCA 206372 || ||||| Sbjct 65669 ACACTTCA 65662 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || ||||| || | || || ||| ||||| || | || ||| Sbjct 65621 AAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCTGATACCATTGA-TCA 65563 Query 206245 G--TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 | |||| | ||| |||||||| ||||| || || || || ||| | | || | Sbjct 65562 GGTTAAAACCAAA-ATTCAAGATAAAGAGGGTATCCCTCCAGATCAGCAACGTTTGATTT 65504 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || ||||| ||||||||||| | ||| | | ||||| ||| |||| ||||| | Sbjct 65503 TCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAACATCCAAAAAGAAT 65444 Query 206363 CTACTCTTCACCTTGT 206378 | ||||||||||| || Sbjct 65443 CAACTCTTCACCTCGT 65428 >seq1465 Length=43607 Score = 107 bits (118), Expect = 5e-18 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||||||||| |||||||| |||| ||||||||| | |||||| | ||||||||| Sbjct 27031 AACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCTTC 27090 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||| || || |||||||| | ||||| ||| Sbjct 27091 CAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGA 27124 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| || ||| | ||||| || || || || | || | Sbjct 26997 AAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCAGATACCATTGACCAA 26938 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| ||| ||||| ||| | | ||||| Sbjct 26937 GTTAAAGCGAA-GATTCAAGACAAAGAAGGCATTCCCCCGGATCAGCAACGCTTGATCTT 26879 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || |||||||||||| | || ||| | |||||||| |||| || ||||| Sbjct 26878 TGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAATATCCAAAAGGAGTC 26819 Query 206364 TACTCTTCACCTTGT 206378 ||||| || || || Sbjct 26818 AACTCTCCATCTCGT 26804 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 |||||||| || || ||| ||||||||||| | |||||| |||| || || |||| ||| Sbjct 27111 ATCTTCGCTGGTAAACAGCTGGAAGATGGACGTACTTTGTCCGACTATAATATCCAAAAA 27052 Query 206359 GAGTCTACTCTTCACCTTGTT 206379 ||||| ||||||||||||||| Sbjct 27051 GAGTCAACTCTTCACCTTGTT 27031 >seq575 Length=50698 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||| ||||| |||||| || || |||| | Sbjct 23121 AAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCGATACCATCGATAAA 23062 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || |||| |||||||| ||||||||||| ||||| ||| | | || || Sbjct 23061 GTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAACAACGTTTAATATTT 23002 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAG--GACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 || || || ||||| ||||||||| | ||||| |||||||||| | || ||||| | Sbjct 23001 GCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCGATTACAATATTCAAAAAGAAT 22944 Query 206363 CTAC 206366 | || Sbjct 22943 CAAC 22940 >seq218 Length=131350 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || || ||||| |||||| | ||||| || ||||| || | || | Sbjct 42226 AAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTGATACCATAGACCAA 42167 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||||||| ||||||||| |||||||| || || || ||| | | ||||| Sbjct 42166 GTTAAAGCAAA-GATTCAAGATAAAGAAGGTATCCCCCCAGATCAACAACGCTTGATCTT 42108 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || || |||||||| | || ||| | || || ||| | || ||||| || Sbjct 42107 CGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACATTCAAAAAGAATC 42048 Query 206364 TACTCTTCACCTTGT 206378 ||||| || || || Sbjct 42047 CACTCTCCATCTCGT 42033 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| || || | ||||| || ||||| || | || Sbjct 41543 CAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTGATACCATAGACCA 41484 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 ||| |||||||| ||||||||| || ||||| ||| || || ||| | | |||| Sbjct 41483 AGTTAAAGCAAA-GATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCAACGCTTGATCT 41425 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| || || || ||||||||||| | ||||| | ||||| || | || ||||| | Sbjct 41424 TCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAATATTCAAAAAGAAT 41365 Query 206363 CTACTCTTCACCTTGT 206378 ||||||| || || || Sbjct 41364 CTACTCTCCATCTCGT 41349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTC--TG 206230 || ||||| ||| || || || || ||||| || || | ||||| || || | || Sbjct 42466 CAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGA--GTCCAATG 42409 Query 206231 ACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 | || | || ||| |||||||| ||||||||| || ||||||||| || || Sbjct 42408 ATACTATTGATCAAGTTAAAGCAAA-GATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 42350 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 ||| | | |||||||| || || || ||||||||||| | |||||| | ||||| || Sbjct 42349 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 42290 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 | || ||||| || ||||| || || || Sbjct 42289 ATTCAAAAAGAATCAACTCTCCATCTCGT 42261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181651269283516