Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq9243 120 7e-22 >seq9243 Length=648 Score = 120 bits (132), Expect = 7e-22 Identities = 194/277 (70%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 279309 TTGATGATATGACGTTACCACCTTGTCATAGCTTTGTGCAATTTTGTGTAGTGCAAGGAA 279368 ||||||| ||| | ||||||||||||||| ||| | ||||||| ||||| | |||| | Sbjct 627 TTGATGAGATGGCTTTACCACCTTGTCATTCATTTTTCCAATTTTATGTAGCGGAAGGGA 568 Query 279369 AACTAAGCTGTATTCTGCATCAACGCTCCGCTGATCTATTTTTAGGAGTTCCATTTAATA 279428 |||| ||| || ||||| | || ||| ||||||||||||| || || |||| Sbjct 567 AACTTTCTTGTCAATTGTATCAAAGAAGTGCCGATGTATTTTTAGGAGTGCCGTTCAATA 508 Query 279429 TCAGTAGTTACTCACTACTAACTCATATGATTGCACA--AATTACTGGTTTAGATGTTGG 279486 || | ||| || | |||| ||| | |||||||| ||| ||| ||||||||||| Sbjct 507 TCGCTTCTTATGCATTGTTAACACATTTAATTGCACATGAATG--TGGGTTAGATGTTGG 450 Query 279487 TGAATTTATTTGGAATGGTGGTGATTGTCACATTTATAAAAACCACGTTGAACAAGTAAA 279546 |||||| || | ||| ||| || || ||| ||| || | || |||||||| Sbjct 449 TGAATTCGTTCATAGCTTTGGAGATACACATATCTATTTAAATCATTTAGAGCAAGTAAA 390 Query 279547 AGAACAACTACAGCGAAAACCTCGTGAATTACCTGAA 279583 ||||| ||| || |||| ||| | || ||| || Sbjct 389 TGAACAGCTAAGTCGCGAACCGCGTAACTTGCCTCAA 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115011230085324