Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq256 120 3e-22 seq575 118 1e-21 seq218 111 1e-19 seq1465 102 8e-17 seq1592 89.7 5e-13 seq1647 86.0 6e-12 >seq256 Length=68436 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||||||||||||||| |||||||| | ||| || ||| || Sbjct 65656 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 65715 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| | || ||||| || |||||||| || || |||||||| || | Sbjct 65716 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 65775 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||| | || || | ||||||| | ||| ||||| | || | ||||| Sbjct 65776 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 65835 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | ||||| ||||| Sbjct 65836 CCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||||||||| || || | |||||| ||||| || ||||| || | Sbjct 66125 TTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCAG 66184 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || ||||| || || ||||| || || |||||||| || ||||||| ||| | Sbjct 66185 CGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAA 66244 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||| |||| | || ||||| | || | || || || || || |||| Sbjct 66245 CTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTT 66304 Query 132108 TTATGAAAATCTGCATGA 132125 | | ||| || ||||||| Sbjct 66305 TAACGAAGATTTGCATGA 66322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| |||||||| ||||| || || | ||||| |||||| | || ||||| | Sbjct 65441 TTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAG 65500 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || | ||| || ||||||||||| || || |||||||| |||||| ||| | Sbjct 65501 CGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCTTGAATTTTGGTTTTAA 65560 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 ||| || | ||||| | | || || || | || | ||| |||||||| || |||| Sbjct 65561 CCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTT 65620 Query 132108 TTATGAAAATCTGCAT 132123 ||| ||||| ||||| Sbjct 65621 TTACAAAAATTTGCAT 65636 >seq575 Length=50698 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| |||| ||||||||||| ||||| ||| | | ||| |||||| Sbjct 22928 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 22987 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||||||| | | | |||| ||| |||||||| || || || ||||||||||| | Sbjct 22988 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 23047 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||||| ||| | | || | |||||| | || ||||| | || | |||||| Sbjct 23048 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 23107 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | ||||| |||||| Sbjct 23108 CCAGTAAGTGTTTTAACAAAAATTTGCATG 23137 >seq218 Length=131350 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||| ||||| || ||||| |||||| | |||||||| | Sbjct 42048 GATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCG 42107 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || ||||||||||| || || ||||||||||| ||| ||| ||| | Sbjct 42108 AAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTTGCTTTAACT 42167 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| ||||| ||||| Sbjct 42168 TGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTA 42227 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 42228 ACGAAAATTTGCAT 42241 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || |||||| |||||| | |||||||| | Sbjct 42274 TTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAG 42333 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||||| || |||||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 42334 CGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAA 42393 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | |||||| | | ||| ||||| | || | ||||| ||||| || || | Sbjct 42394 CTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCT 42453 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| || ||||| Sbjct 42454 TGACGAATATTTGCAT 42469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || |||||||| || ||||| | ||||| |||||| | |||||||||| Sbjct 41590 TTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGG 41649 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || ||||||||||| || || ||||| ||||| ||| ||| ||| | Sbjct 41650 CGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAA 41709 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || ||||| | Sbjct 41710 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGAGTCT 41769 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 41770 TGACGAAAATTTGCAT 41785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || ||||| |||||| | |||||||| | Sbjct 41818 TTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGTTTACCAG 41877 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || |||||||||||||| || ||||||||||| ||| || ||| | Sbjct 41878 CGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTCGTTTTTA 41937 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || || || | Sbjct 41938 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCT 41997 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 41998 TGACGAAAATTTGCAT 42013 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || || | ||||| |||||| | |||||||| | Sbjct 41364 GATTCTTTTTGAATATTATAATCCGATAAAGTACGGCCATCTTCCAATTGTTTACCAGCG 41423 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || || ||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 41424 AAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACT 41483 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| || || || || Sbjct 41484 TGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTG 41543 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 41544 ACGAAAATTTGCAT 41557 >seq1465 Length=43607 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| || ||||| || || |||||| |||||| | |||||||||| Sbjct 26817 TTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGG 26876 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | || || ||||| || || ||||||||||| || ||| || ||| | Sbjct 26877 CAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAA 26936 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || ||||| | Sbjct 26937 CTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCT 26996 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 26997 TAACGAAAATTTGCAT 27012 >seq1592 Length=32188 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 131942 ATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGC 132001 || ||||| || || | ||||| |||||| || || ||||| | | | |||| | Sbjct 12452 ATATTGTAATCACTTAAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTT 12511 Query 132002 TGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTA 132061 ||||||||||| ||||| |||||||| || ||||||||| ||| || || || | ||| Sbjct 12512 TGTTGATCTGGTGGTATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTA 12571 Query 132062 TCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 || | ||| ||||| | || || ||||| ||||| | ||||| Sbjct 12572 TCACTAAACTCGACTTCAATTGTTAGAGTTTTTCCAGTTAATGTTTT 12618 >seq1647 Length=14880 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 || || | |||||| ||||| || || ||||||| | || | ||||| || |||| Sbjct 4439 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 4380 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 |||||| | |||||| ||| |||||||||| || | ||| |||||||| || | | Sbjct 4379 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 4320 Query 147013 AACAATGAATTTCGCAGACC 147032 || ||||||||||| | ||| Sbjct 4319 AATAATGAATTTCGTACACC 4300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476544498262560