Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1647 428 6e-115 seq54 188 1e-42 seq370 105 9e-18 >seq1647 Length=14880 Score = 428 bits (474), Expect = 6e-115 Identities = 697/989 (70%), Gaps = 16/989 (2%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA-CACATCAATG 69574 ||| |||||||| ||||||||||| || |||||| |||| ||| || || || Sbjct 3414 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 3355 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAA 69634 ||| ||||| | ||| | ||||||||| ||||| | || |||||| || || Sbjct 3354 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 3296 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | ||| | | | | |||||| ||||| ||||||||||| | ||| | ||| || | Sbjct 3295 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 3236 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTC 69754 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| ||||||| Sbjct 3235 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 3176 Query 69755 CCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAG 69814 | ||||| | ||||| ||||| |||||||| || | | ||| |||||||| ||||| | Sbjct 3175 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 3116 Query 69815 ATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGAC 69874 | | |||||||||||||| ||||||| |||| | || ||||| ||| ||| | || Sbjct 3115 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 3056 Query 69875 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCT 69934 | || || ||||| | ||||| || | || || |||||| || ||||| || |||| Sbjct 3055 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 2996 Query 69935 CTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA-GT 69992 |||| ||||||| |||| ||||| ||||||||| || || | |||| | | || || Sbjct 2995 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGG-TCTAGGTGT 2938 Query 69993 TCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTA 70052 || |||||||| || || |||||||||||||| || | ||||| || | ||||||||| Sbjct 2937 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 2878 Query 70053 TGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACA 70111 ||||||||||| | ||| ||||| | | | ||||| || | ||| || ||||| | || Sbjct 2877 AGTTTCAATAGCAGCTTCGATATCATCTCCG-TGAATCCCAACCGCTACGCGCATAAGCA 2819 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 |||| || || || || | ||| | |||| || || || ||| |||| |||| Sbjct 2818 TATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAG 2759 Query 70172 TTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTT 70231 ||||||| |||||||| || ||| | | ||||| || ||||| || |||||| |||| Sbjct 2758 TTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTT 2699 Query 70232 TATCCTTATATTTGGTAACTATATCCATAACAGTAGGT---GAGATAATCGGAGATCGTT 70288 | ||| || || | || |||| || ||| | || || || | | |||| Sbjct 2698 TTTCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTT 2642 Query 70289 TACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAGttttt 70348 | || |||| ||||| | ||| || | | |||||| | |||| ||| | ||||| Sbjct 2641 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 2582 Query 70349 ttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGAT 70408 | ||||| || || | ||| || | || || | || || || | |||||||| |||| Sbjct 2581 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 2522 Query 70409 GTTGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTA 70467 ||| || || || || || || |||| ||||| || |||||||||| | ||| || Sbjct 2521 GTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 2463 Query 70468 ACTCCGTTATATAGCCCTTGAATAACTTT 70496 || || | ||| | ||| ||| || || Sbjct 2462 ACACCTTGATAAACTCCTGAAATGACCTT 2434 Score = 178 bits (196), Expect = 2e-39 Identities = 278/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 || ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 4442 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 4383 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 ||||| | | |||||||| |||| ||||| | ||| |||||||| ||||| ||||| Sbjct 4382 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 4323 Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCC 68886 | |||||| ||||| | ||||||| | ||||| | ||| | ||||||||| Sbjct 4322 AGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCC 4263 Query 68887 CAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATAT 68946 || | ||||| || |||||||||| | ||||||||||| ||| || || | | Sbjct 4262 CATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGGT 4203 Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 ||||| | ||| | ||||| || || | || | ||||||||| ||| |||||| Sbjct 4202 GATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAAT 4143 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| | ||| ||||| || || || | |||||| || || | ||| || | ||| Sbjct 4142 GCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGAATCA 4083 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 ||| || | | | | || || | |||||||||||| Sbjct 4082 AATTGAATACGCATAGCAAGGAAAGTATCTGCCAATCC 4045 Score = 105 bits (116), Expect = 9e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 ||||||||| || ||||| | || | ||||| || || || |||| | | | Sbjct 3746 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 3687 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| | ||||||||||| | ||||||||||||||| || || |||||||| ||||| Sbjct 3686 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 3627 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 | || ||||| | || ||||| || ||| | || ||||| ||||| ||||| || Sbjct 3626 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 3567 Query 69435 TTCGATAATAGATTTCCAAAC 69455 ||| | ||| | | |||| || Sbjct 3566 TTCAAGAATTGCTGTCCAGAC 3546 >seq54 Length=215934 Score = 188 bits (208), Expect = 1e-42 Identities = 208/275 (76%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| Sbjct 101676 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 101617 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | |||||| || || || ||| | |||| | ||||||||||| || || ||||| Sbjct 101616 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 101557 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA--- 40084 |||||||| || ||||| || || |||||| ||||||| || | | |||| Sbjct 101556 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATAC 101497 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 | ||| ||||| ||||| || || | || ||||| ||| | |||||||| || || || Sbjct 101496 TCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTCG 101437 Query 40145 GCCTTTTTGTACATGTTCCATATAT-CACGATATT 40178 |||||||||||||| | ||| || | ||| ||||| Sbjct 101436 GCCTTTTTGTACATTTGCCAGATCTACACAATATT 101402 Score = 141 bits (156), Expect = 1e-28 Identities = 310/457 (68%), Gaps = 8/457 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||| |||||| || || |||||||| || || ||||| ||||| |||| Sbjct 102353 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 102294 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || ||||| |||||||| ||||| || |||||| |||| || Sbjct 102293 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACC 102234 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCACAAT 39491 | | | | |||||||| || |||||||| || ||| ||||||| | ||| | | Sbjct 102233 AAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG-T 102175 Query 39492 TCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGG 39551 |||| || || | |||||||||| || || |||| ||| |||| ||| || || | Sbjct 102174 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 102115 Query 39552 CCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA--TGCAATAA-ATGTTTAA 39608 | || | ||| || | | ||| | | | | || || |||| || ||| | | Sbjct 102114 CTTCCGCTATAATAGCTTCTAC-AGTTTTTG--TTGGAGGTCGTGCACGAAGATGAGTGA 102058 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 | | | || || || |||||||| | || ||||||| | ||||| |||||| |||| Sbjct 102057 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 101998 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | || | ||| ||||| | || | || || | |||||| || | || |||| ||||| Sbjct 101997 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 101938 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||| || ||||| || || ||||| || ||||| Sbjct 101937 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 101901 >seq370 Length=116867 Score = 105 bits (116), Expect = 9e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||||||||| |||| | | | ||| ||||| |||||||| | | || || ||| Sbjct 20320 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 20379 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||||| || || ||| ||| ||||| || |||| || || | | ||| || |||||| Sbjct 20380 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 20439 Query 70060 ATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 ||||||| || ||||| | ||||||||| || | |||||||||||||| || || Sbjct 20440 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 20499 Query 70120 GGTCGTTCTAC 70130 |||| ||| || Sbjct 20500 GGTCTTTCAAC 20510 Score = 86.0 bits (94), Expect = 9e-12 Identities = 183/272 (67%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 |||||||||||||| || ||||||||||||||| ||||||||||| ||| || Sbjct 19192 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 19251 Query 69184 ATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 69242 | |||||| | ||| | || |||||| | | || | || || | |||||||| Sbjct 19252 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 19311 Query 69243 -TCGTCCATCT----ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCT 69297 | || || | ||||||| || | || | || |||| ||||||||| ||| Sbjct 19312 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 19371 Query 69298 ACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTC 69357 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 19372 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 19431 Query 69358 CCCAGATTTTGCTGATTACTCTTTTTGTTACA 69389 || ||||| | |||||| |||| ||||| Sbjct 19432 CCAAGATTCTTTTGATTAGATTTTTCATTACA 19463 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 70343 GtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGT 70402 ||||||||||||||||||||||||| || || || ||||| || || | ||||||||| | Sbjct 20886 GTTTTTTTGTTTCCTTGTGTAAATTAGAAATTGCAATTCTTGCCGCCAAAATAGCATAAT 20945 Query 70403 CAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAG 70462 ||||||| | ||| | || || |||| || ||||| |||| | ||| | || Sbjct 20946 CAGGATGATTACAAGTTAGATATGCAGCAGTTTCAGCCGCTAAATTATCAAGTTCCACAG 21005 Query 70463 TTGTAACTCCGTTATA 70478 | || || || | ||| Sbjct 21006 TGGTGACACCCTGATA 21021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686812667113440