Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq9243 113 1e-19 >seq9243 Length=648 Score = 113 bits (124), Expect = 1e-19 Identities = 178/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 6108 TAGTTGTTCTTTTACTTGTTCAACGTGGTTTTTATAAATGTGGCAATCACCACCATTCCA 6167 ||| ||||| |||||||| || | || ||| ||| || || ||| ||| | Sbjct 380 TAGCTGTTCATTTACTTGCTCTAAATGATTTAAATAGATATGTGTATCTCCAAAGCTATG 439 Query 6168 AATAAATTCACCAACATCTAAACCCGTAAT-TTGTGCAATCATATGAGTTAGTAGTGAAT 6226 || ||||||||||||||| ||||| | | |||||||| | ||| |||| | || || Sbjct 440 AACGAATTCACCAACATCT-AACCCACATTCATGTGCAATTAAATGTGTTAACAATGCAT 498 Query 6227 AACTACTGATATTAAATGGAACTCCCAAAAATAGATCAGCGGATCTTTGATGTAGAATG- 6285 || | |||||| || || ||||| ||||||| ||| || |||||||| | | || Sbjct 499 AAGAAGCGATATTGAACGGCACTCCTAAAAATACATCGGCACTTCTTTGATACA-ATTGA 557 Query 6286 CAGCTTAGTTTCCCTTGTACTACACAAAATTGTACAAAGCTATGACAAGGTGGCAACGTC 6345 || |||||||||| ||||| ||||||| | ||| |||||||||||| || | | Sbjct 558 CAAGAAAGTTTCCCTTCCGCTACATAAAATTGGAAAAATGAATGACAAGGTGGTAAAGCC 617 Query 6346 ATATCATCAA 6355 || ||||||| Sbjct 618 ATCTCATCAA 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113670622421408