Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq54 232 5e-56 seq37 113 4e-20 seq9243 87.8 1e-12 >seq54 Length=215934 Score = 232 bits (256), Expect = 5e-56 Identities = 353/501 (70%), Gaps = 14/501 (3%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGA------TTCTTTTGGAGAACGA 44131 ||||| || ||||| ||| |||||| ||| || | ||| |||| ||||| Sbjct 101844 AAAGCGGATTGGGCTCTTCGATGGAT---TTCCGATAAGGAATCTTCATTTGCTGAACGT 101900 Query 44132 CTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTT 44191 ||||| |||||||| | ||| ||||| || |||||||| ||| | || ||| | || ||| Sbjct 101901 CTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTTT 101960 Query 44192 TGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGT 44251 |||||||||||| |||| ||||||| || || || ||||| || || |||| ||| Sbjct 101961 TGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCGA 102020 Query 44252 GATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAG-ACGATAA 44310 |||||||| || ||||| |||||||| || | ||| | |||| | | |||| Sbjct 102021 GATGAAGGATTGCATTGTGATTTTGCATGTCTCTTATTCACTCATCTTCGTGCACGA--- 102077 Query 44311 GCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATT 44370 ||| || || || | || |||| | | || || || | |||||||||||||| Sbjct 102078 -CCTCCAACAAAAACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAATT 102136 Query 44371 TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATA 44430 | | ||| ||||||||| || |||||||| || ||||| | ||| ||||| |||| Sbjct 102137 TTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAATA 102196 Query 44431 TATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGT 44490 |||||||| | || ||| | ||| | ||| ||| ||| | | ||| |||| | Sbjct 102197 TATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGGTGGAGCAAAATTGTATAATTC 102256 Query 44491 ACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGA 44550 | | || || |||||||||||||| ||| || |||| |||||||| || ||||| Sbjct 102257 AGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAGGTAAAACAAATTTCTTTGA 102316 Query 44551 AAAACGCGTTGGAGAATATCA 44571 ||||||||| ||| ||||| Sbjct 102317 AAAACGCGTATCAGATTATCA 102337 Score = 138 bits (152), Expect = 9e-28 Identities = 209/294 (71%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||||||||||||||| || | || ||||||||||| | || |||||||| | Sbjct 101414 ATCTGGCAAATGTACAAAAAGGCCGAAGCTTCATTTTGGACTGTTGAGGAAGTTGACCTT 101473 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAA---AACCAC-AAGAAAAACATTTTATATC 43845 | || || | ||||| | || || ||| | |||||||| ||||| || Sbjct 101474 TCCAAGGATATGAATGATTGGGA-GTATAAACTTAACGATGAAGAAAAATTCTTTATTTC 101532 Query 43846 TTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG 43905 | |||||||| || ||||| || || || || |||||||||||||| || || Sbjct 101533 TCACGTTTTGGCCTTCTTTGCCGCCTCGGATGGTATTGTCAATGAAAATTTAGTGGAACG 101592 Query 43906 GTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCAT 43965 ||| | ||||| ||| | ||||||||| ||||||||||||| ||||| || || Sbjct 101593 TTTTAGTAATGAAGTCCAAATTCCAGAAGCAAGATGTTTTTATGGATTTCAGATCATGAT 101652 Query 43966 AGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 |||||||| ||||| ||||||||| || |||| ||| | || ||||| || Sbjct 101653 CGAAAATATCCATTCAGAAATGTACTCCCTCTTGATTGATTCTTATATCAAGGA 101706 >seq37 Length=134598 Score = 113 bits (124), Expect = 4e-20 Identities = 253/377 (67%), Gaps = 5/377 (1%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAAC---TG 41105 |||||||| ||||| |||||| |||| || || || || || | ||| || | Sbjct 88579 ATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATTA 88520 Query 41106 TCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCG 41165 || |||| | |||||||||||| |||| | ||||| || || || |||||||| || Sbjct 88519 TCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGCA 88460 Query 41166 AGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTT 41225 || |||||| | | || |||||||||| || || || || | |||||||||||| Sbjct 88459 AGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATTT 88400 Query 41226 GTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAA 41285 |||| || | || ||| ||||| || | | |||| || | | |||| | ||| Sbjct 88399 ATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCAA 88340 Query 41286 CTGACACGAAAACCTAGACCATTTCCAACGCTACTTA-TTAAACGCGCTGTTGAAAACAT 41344 | ||| |||| | | ||||||| || | | ||| |||| || | || || Sbjct 88339 ATCGAACGTGAACCAAAAGCATTTCC-TCGTTTGAAATTTAGACGCAAAATTAATAATAT 88281 Query 41345 TGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCA 41404 |||||||||| ||||||||| | || | ||| | || | ||| ||||| | Sbjct 88280 TGATGATTTTAAATATGATGATTTTATTATTACTGGTTATGAACCTCATCCTCAAATCAA 88221 Query 41405 CATGGACATGTCTGTAT 41421 ||| | |||||||||| Sbjct 88220 AATGAAAATGTCTGTAT 88204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 40736 AGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGG 40795 ||||||| | ||||||||||| |||||| ||| ||| || | ||| | |||| ||| Sbjct 88966 AGAAGAATTATTATGGTTTATTAAAGGTAATACAAATAGCAAACATTTAACCGAAAAAGG 88907 Query 40796 AGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGA 40855 | || |||||| | | | ||||| ||||||| || || || || | | Sbjct 88906 TATTCATATTTGGGACGGTAATGGTTCTCGTGAATATTTGGATAAAATTGGGCTATCACA 88847 Query 40856 TAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGC 40912 ||| | ||||||||| | ||||||||||||||||| || | | |||||||||| || Sbjct 88846 TAGAAAAGAAGGTGATTTGGGTCCTGTTTATGGATTCCAATGGAGACATTTTGGTGC 88790 >seq9243 Length=648 Score = 87.8 bits (96), Expect = 1e-12 Identities = 179/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 41022 GCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAG 41081 |||||||| ||| | || || || |||||| || ||||||||||||| || | || Sbjct 646 GCGTGGAATCCAGCAGAAGTTGATGAGATGGCTTTACCACCTTGTCATTCATTTTTCCAA 587 Query 41082 TTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGA 41141 ||||| || | || |||| || |||||||||||||||||| | || | Sbjct 586 TTTTATGTAGCGGAAGGGAAACTTTCTTGTCAATTGTATCAAAGAAGTGCCGATGTATTT 527 Query 41142 CTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTT 41201 |||| || ||||| || || || |||||| || | || || | |||||||| | Sbjct 526 TTAGGAGTGCCGTTCAATATCGCTTCTTATGCATTGTTAACACATTTAATTGCACATGAA 467 Query 41202 ACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAAT 41261 ||| | ||||||||| ||||| | || |||||| |||||| || | ||| Sbjct 466 TGTGGGTTAGATGTTGGTGAATTCGTTCATAGCTTTGGAGATACACATATCTATTTAAAT 407 Query 41262 CACATAGAGCCGTTAACAGAACAACT 41287 || |||||| ||| ||||| || Sbjct 406 CATTTAGAGCAAGTAAATGAACAGCT 381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397401766631980