Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1647 120 3e-22 seq575 120 3e-22 seq256 113 4e-20 seq218 89.7 4e-13 >seq1647 Length=14880 Score = 120 bits (132), Expect = 3e-22 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 130754 TTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGT 130813 |||| |||||||| || ||||| || || |||| ||||||||||||||| | ||| Sbjct 4439 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 4380 Query 130814 TCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACT 130873 ||||| |||| || ||| |||||||| | |||| ||| || ||||| ||| | Sbjct 4379 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 4320 Query 130874 AATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCAT 130933 |||| ||||| || | ||| || | |||||| | ||||| || |||||||||| Sbjct 4319 AATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATCCCAT 4260 Query 130934 AGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTT 130983 | | ||||| | ||| ||||||||||| |||||| |||||||| Sbjct 4259 AAATCAGTAGGCTCAACA---TTCCACATATCGTATTGTAAAATGCCTTT 4213 >seq575 Length=50698 Score = 120 bits (132), Expect = 3e-22 Identities = 175/246 (71%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| || || | |||||| ||||| || || ||||||||||||||||| ||| Sbjct 22909 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 22968 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | ||||| | ||||||||| || | || | ||| ||||||||||| || Sbjct 22969 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 23028 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| || || | ||| | | || | || || | |||||| Sbjct 23029 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 23088 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 ||||| ||| || | ||| || || || ||||| ||||| |||||||| | | ||||| Sbjct 23089 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT-GTTTAAAAAAA 23147 Query 27260 TTTATT 27265 |||||| Sbjct 23148 TTTATT 23153 >seq256 Length=68436 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || |||||||||||||||||||| | | | || | || || Sbjct 65656 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 65715 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||||||| |||||||||| || ||||| || || | ||| ||||| || Sbjct 65716 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 65775 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | || | || || | | |||||||| | ||| || | ||| Sbjct 65776 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 65835 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || |||||||| ||||| ||||||||| Sbjct 65836 CCAGTTAGAGTTTTAACAAAAATTTGCATA 65865 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||||||||||||||||||| | | | || | || || || |||||||| Sbjct 65896 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 65955 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||||||||| || || || || || | |||||| ||||| || ||| |||| Sbjct 65956 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 66015 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | || | || || | || || || || | || || | |||||| || || || Sbjct 66016 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTC 66075 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || |||||||||||| || Sbjct 66076 TTTACGAAGATTTGCATACCT 66096 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||| | ||| | || || ||||||||||| || || || Sbjct 66094 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 66153 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||| || ||||| || ||| |||| ||||| || || || || || Sbjct 66154 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 66213 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | || | |||||| | | ||||||| Sbjct 66214 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 66273 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 || || || || | || || || || ||||| || ||||||||||| || ||| || Sbjct 66274 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTAATTAT 66333 Query 27261 TTATTAAA 27268 | |||||| Sbjct 66334 TAATTAAA 66341 >seq218 Length=131350 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| | ||| | || || ||||||||||| || ||||| || | || Sbjct 42024 AAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGA 42083 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||| ||| | || | || |||||||| || || | ||| ||| Sbjct 42084 CCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCT 42143 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||||| ||| | |||| || || | || || ||||| ||||| Sbjct 42144 TTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTG 42203 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || ||||| ||||| || || ||||||||| Sbjct 42204 ATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 42242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCG 27088 || || | ||| | ||| | || || || ||||||||||| ||||| | | | || | Sbjct 41568 AAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGG 41627 Query 27089 CTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTC 27148 | | ||||| | |||||||||||| | || | || |||||||| || || | ||| || Sbjct 41628 C-CATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTC 41686 Query 27149 TTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGT 27208 ||||| ||||| ||| | |||| || || | || || ||||| ||||| Sbjct 41687 CTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGT 41746 Query 27209 TATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || || ||||| || || || ||||||||| Sbjct 41747 AATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCATA 41786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || | ||| | ||| | || || |||||||||||||| || || || | || Sbjct 41796 AAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGA 41855 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| | |||||||| ||| | || | || |||||||| || || | ||| ||| Sbjct 41856 CCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCT 41915 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| ||||| |||| | |||| || || | || || ||||| ||||| Sbjct 41916 TTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTA 41975 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || || || || || || || ||||||||| Sbjct 41976 ATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 42014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424876417169952