Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq11023 744 0.0 >seq11023 Length=509 Score = 744 bits (824), Expect = 0.0 Identities = 441/460 (96%), Gaps = 0/460 (0%) Strand=Plus/Plus Query 43184 CCCGATCGCCGCGCCCACACGGCCAATAACAAACAGCACACCGCAGATAATCAATACAAA 43243 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 CCCGATCGCCGCGCCCACACGGCCAATGACAAACAGCACACCGCAGATAATCAATACAAA 60 Query 43244 CAGCGTTAGCGCAGCGATCTTCTTCATGGTGGCCCCTTTATTCCTTCGGTGGATTTGATT 43303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAGCGTTAGCGCAGCGATCTTCTTCATGGTGGCCCCTTTATTCCTTCGGTGGATTTGATT 120 Query 43304 GGTGGCGATTTAGCCAGATGACAATCCCGGCAGTATAATTGATCACGCCGAGCAACTCCC 43363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGTGGCGATTTAGCCAGATGACAATCCCGGCAGTATAATTGATCACGCCGAGCAACTCCC 180 Query 43364 TAACCCTTTGGTCATGCGTTGGCAGGTTGACGCCTTCTACGACCTTCTTGCACACCTGAT 43423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TAACCCTTTGGTCATGCGTTGGCAGGTTGACGCCTTCTACGACCTTCTTGCACACCTGAT 240 Query 43424 AGACCAAGCCGAGCGGGCTACCGATCAGGTCGGAAATAGCGTTCATCGGCTGCTGGTGGA 43483 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| || Sbjct 241 AGACCAAGCCGAGCGGGCTACCGATCAGGTCAGAAATGGCGTTCATCGGCTGCTGGCTGA 300 Query 43484 AAGGCAGGTCGTTTGCGTGGCGTTCCCGCCCTTTACCATACGCGGCTTGCGTCAGCGCAT 43543 | |||||||| || |||||||| || |||||||||||||||||||||||||||||||||| Sbjct 301 ACGGCAGGTCATTGGCGTGGCGCTCGCGCCCTTTACCATACGCGGCTTGCGTCAGCGCAT 360 Query 43544 CATGCAGCACTTTGACTAATTCGGAATAATCGTTGCTGTCTTTGACGTCCCGGAATTCGT 43603 | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 361 CGTGTAGCACTTTGACTAATTCGGAATAATCGTTGCTGTCTTTGACGTTCCGGAATTCGT 420 Query 43604 ACTGCCATGACCGGGGGGCCGAAGGTGCCACGGCTTTCGG 43643 || |||||||||||| |||||| ||||| || |||| ||| Sbjct 421 ACCGCCATGACCGGGAGGCCGACGGTGCAACTGCTTCCGG 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471175649738080