Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq370 84.2 3e-11 seq54 84.2 3e-11 >seq370 Length=116867 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| ||||||| ||||| || | || || |||||||| | || |||||| Sbjct 20507 GAAAGACCACAACACATGTTGATGCGTGTTTCTATTGGAATTCATGGTTATGATATTGAT 20448 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334 | | | || || || | |||||| | | ||| || | ||| |||| ||||| Sbjct 20447 GCAGCTATTGAAACTTATAATTTAATGTCCGAGAAATATTTT-ACTCATGCAAGTCCAAC 20389 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 | || |||||||||||||||||||| |||||||| || ||||| Sbjct 20388 TTTGTTTAATGCTGGTACACCAAGACCACAAATGTCAAGCTGCTT 20344 >seq54 Length=215934 Score = 84.2 bits (92), Expect = 3e-11 Identities = 326/502 (65%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGTC 94790 ||| || || |||| ||| ||||||||||||||| | ||| || |||| | || Sbjct 101825 AGTCCCTTGCATTCGAAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATC 101884 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 ||| |||||||| || || | || ||||| |||||| || || ||||| ||||| Sbjct 101885 ---TTCATTTGCTGAACGTCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGG 101941 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||| ||| | || | |||| | ||||| |||| | |||||||| | || | Sbjct 101942 AGCTTTC-GCGTCAATCTTTTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTT 102000 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCA 94969 ||||||| || || ||||| || || ||| | || || ||||| || ||| | Sbjct 102001 CCAACGAACTAATTTCTCGAGATGAAGGATTGCATTGTGATTTTGC-ATGTCTCTTATTC 102059 Query 94970 AATTAT-TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTT 95028 | | || | ||| ||| | || | ||| | | ||||| | |||||| ||| Sbjct 102060 ACTCATCTTCGTGCACGACCTCCAACAAAAACTGTAGAAGCTATTATAGCGGAAGCGGTT 102119 Query 95029 GAGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCT 95088 || || ||| ||| || || || | ||| | | || |||||||| | Sbjct 102120 ACAATAGAACAAGAATTTTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCG 102179 Query 95089 GAAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTT-GAAGCAGATCGGGGT 95147 | |||| |||||||||| | |||| |||||||||| || | ||| | | || Sbjct 102180 AATTTAATGAAAAAATATATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGGTGGA 102239 Query 95148 GCCTCCAATT-TGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACG 95206 || |||| | || || ||||||| ||||| || ||||| ||||| | | | Sbjct 102240 GC--AAAATTGTATAATTCAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAG 102297 Query 95207 GGAAGACAAACTTCTTCGAAAA 95228 | || ||||| ||||| ||||| Sbjct 102298 GTAAAACAAATTTCTTTGAAAA 102319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583179172651040