Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq256 122 5e-23 seq1465 114 8e-21 seq575 114 8e-21 seq218 114 8e-21 >seq256 Length=68436 Score = 122 bits (134), Expect = 5e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | ||| ||||| ||| ||||||||||||||||||||| Sbjct 66094 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 66153 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||||||||||||||| || || || || | ||| || ||||| || || Sbjct 66154 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 66213 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| || |||||| ||| ||||| |||||| | | ||| ||||| || | Sbjct 66214 ATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTTGGT-CAATAGTGTCGGAAGATTCAA 66271 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || ||||| | ||||| || || || |||||| Sbjct 66272 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 66321 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||| || || ||| |||||||| || || || ||| Sbjct 65638 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 65697 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || ||||||||||||||||| || || | ||| || || || || || Sbjct 65698 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 65757 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||||| ||||| ||| || || || ||| || Sbjct 65758 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGAT-CGATGGTATCGGAAGACTCAAC 65816 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || |||| ||||| |||||||| ||||| Sbjct 65817 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||| |||||| || |||||||| || || || ||| Sbjct 65866 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 65925 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || |||||||||||||| || || || | ||| || ||||| || || Sbjct 65926 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 65985 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||||| ||| ||| ||| ||||| || | | || || || | ||| | Sbjct 65986 ATACCCTCCTTATCT-TGAATTTTGGTTTTTACTTGGT-CGATGGTATCCGAGGACTCTA 66043 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || ||||| ||||| | || || || || || ||||| Sbjct 66044 CGTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||| ||||||||||| ||||| || || | ||||| | ||| ||||| || || Sbjct 65446 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 65505 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--G 34633 || ||||| || || || || || | ||||| || ||| ||| ||| |||||||| | Sbjct 65506 ATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT-TGAATTTTGGTTTTAACCTG 65564 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| || || || || || | ||| ||||| ||||| || | ||||| | Sbjct 65565 AT-CAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTA 65623 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 65624 CAAAAATTTGCAT 65636 >seq1465 Length=43607 Score = 114 bits (126), Expect = 8e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||| | ||||||||| ||||||||| || || |||||||| Sbjct 26786 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 26845 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||||||||| || || || || || ||||| || Sbjct 26846 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 26905 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| || | |||||| | | ||| || ||| | ||| | Sbjct 26906 ATGCCTTCTTTGTCT-TGAATCTTCGCTTTAACTTGGT-CAATGGTATCTGAGGACTCTA 26963 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 26964 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq575 Length=50698 Score = 114 bits (126), Expect = 8e-21 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||| || ||||| ||||||| || | ||||| | |||||||| |||||| Sbjct 22946 TCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAAT 23005 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 |||||||| ||||| ||||| || | ||| || || ||| ||| |||| ||| || | Sbjct 23006 ATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCT-TGAATTTTTTCTTTGACTTT 23064 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || || || || || ||||| | || || |||||||| || | ||||| || Sbjct 23065 ATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAAC 23124 Query 34695 AAAAATCTGCATGTT 34709 |||||| |||||||| Sbjct 23125 AAAAATTTGCATGTT 23139 >seq218 Length=131350 Score = 114 bits (126), Expect = 8e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| || |||||||| ||||||||||| Sbjct 42243 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 42302 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || ||| | ||||| | ||||||||| || || ||||| || ||||| || || || Sbjct 42303 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 42362 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||| ||| ||| |||| |||||| ||| ||| || || | | ||| | Sbjct 42363 ATTCCTTCCTTATCT-TGAATCTTTGCTTTAACTTGAT-CAATAGTATCATTGGACTCGA 42420 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| || || | || || || || || ||||| Sbjct 42421 CTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 42469 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | |||||||||| || |||||||||||||| ||||| Sbjct 42015 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 42074 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||||||||| || || || || || ||||| || || || Sbjct 42075 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 42134 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| ||| |||| |||||| | | || || || | ||| | Sbjct 42135 ATACCTTCTTTATCT-TGAATCTTTGCTTTAACTTGGT-CTATGGTATCAGAGGACTCTA 42192 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | |||||| || ||||| ||||| Sbjct 42193 CTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 102 bits (112), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| ||||||||||| ||||| || || Sbjct 41559 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 41618 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||||||| || || || || ||||| || || || Sbjct 41619 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 41678 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| ||| |||| |||||| ||| || || || | ||| | Sbjct 41679 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGAT-CTATGGTATCAGAGGACTCGA 41736 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 41737 CTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||||||| || |||||||| |||||||| || Sbjct 41331 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 41390 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| || || || || || || || || || || Sbjct 41391 AAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 41450 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| |||||| | |||||| | | | | || || | ||| | Sbjct 41451 ATACCTTCCTTATCTTGAATCTTT-GCTTTAACTTGGTCTA-TGGTATCAGAGGACTCAA 41508 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||||||||| | || || || ||||| ||||| Sbjct 41509 CTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 41557 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| || |||||||| ||||||||||| Sbjct 41787 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 41846 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| || || || || || ||||| || || || Sbjct 41847 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 41906 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| ||| || ||||| || ||| || || || | ||| | Sbjct 41907 ATACCTTCTTTATCT-TGAATCTTCGTTTTTACTTGAT-CTATGGTATCAGAGGACTCGA 41964 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 41965 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| | || | ||| ||||| ||| || |||||||| ||||| || Sbjct 42471 CCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGAT 42530 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | | || ||||||| | ||||| |||||||| ||||| || ||||| ||||| || Sbjct 42531 AAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATCCGGAGGA 42590 Query 34600 ACTCC 34604 | ||| Sbjct 42591 ATTCC 42595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314686654752668