Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq575 158 1e-33 seq256 150 2e-31 seq1465 140 3e-28 seq218 118 9e-22 >seq575 Length=50698 Score = 158 bits (174), Expect = 1e-33 Identities = 191/256 (75%), Gaps = 13/256 (5%) Strand=Plus/Minus Query 26963 CAATAAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTC 27022 ||||||||||||| || || ||||| || ||||| ||||| || || || || | Sbjct 23154 CAATAAATTTTTT----TAAAC---ATGCAAATTTTTGTTAAAACACTTACTGGTAAAAC 23102 Query 27023 TATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGA 27082 |||||| | ||||| ||| ||| | || || | |||||| ||||||||||||| Sbjct 23101 CATTACTTTAGAAGTTGAAAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGA 23042 Query 27083 CAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||||| || || || |||||||| |||||||||| || || ||||| || ||||| Sbjct 23041 TAAAGAAGGAATCCCCCCGGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGA 22982 Query 27143 ---CAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||| || ||||||||||||| |||||||| || || || ||||| ||||| | Sbjct 22981 TGGACGTTC-AC--TTTCCGATTACAATATTCAAAAAGAATCAACATTACACTTGGTACT 22925 Query 27200 GCGTTTGCGGGGTGGC 27215 ||||| || |||||| Sbjct 22924 TCGTTTACGCGGTGGC 22909 >seq256 Length=68436 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || ||||| ||| | || || |||||||| ||| | || Sbjct 66321 CATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTC 66262 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| || ||| ||||||||||||||||||||| || || || || || Sbjct 66261 CGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCA 66202 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||| ||||||||| | |||||| || ||| |||| ||||| || Sbjct 66201 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 66142 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||||||||| ||||| || Sbjct 66141 CATTCAAAAAGAGTCAAC 66124 Score = 132 bits (146), Expect = 4e-26 Identities = 179/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | |||||| | ||||| || | ||| Sbjct 65864 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 65805 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| ||||||||||||||||| || || || ||||| Sbjct 65804 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 65745 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| |||||| | || || | ||| |||| || ||||| Sbjct 65744 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 65685 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 |||||||| ||||| || | |||||||| | ||| | || ||||| || ||| | | Sbjct 65684 ATTCAAAAAGAGTCAACACTTCATTTGGTGCTTCGTCTTCGTGGTGGTAT-GCAA--ATT 65628 Query 27228 TTTGTAA 27234 ||||||| Sbjct 65627 TTTGTAA 65621 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || ||| | ||||| ||||| || ||| | || Sbjct 65636 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 65577 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| ||| ||| ||||||||||| ||||| || || || || ||||| Sbjct 65576 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 65517 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || ||||||||||| || || |||| ||||| ||| Sbjct 65516 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 65457 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||| || || || Sbjct 65456 ATCCAAAAAGAATCAAC 65440 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || |||||||| | || || | || || || | || Sbjct 66092 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 66033 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||||||||||| || || || || || || || || Sbjct 66032 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 65973 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||| | || || | ||| ||||||| ||||| Sbjct 65972 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 65913 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | ||| | ||| | || || || || Sbjct 65912 ATTCAAAAAGAATCCACTCTTCATCTCGTTCTCCGTCTTCGTGGCGGTAT 65863 >seq1465 Length=43607 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| || |||||||||||||||| || | || Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| || ||| || |||||||||||||||||||| || || ||||| Sbjct 26952 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 26893 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| |||||||||||||| | ||| | || |||||||| Sbjct 26892 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 26833 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||| | || | ||||| | ||||| || Sbjct 26832 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGTAT 26783 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || ||||| || |||||||||||||||| ||| | || Sbjct 26784 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 26725 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| ||||| ||| ||||||||||||||||| || || || |||||| Sbjct 26724 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 26665 Query 27108 CAGCGTTTAATATACGCCGGCAAACA 27133 || | || || | || |||||||| Sbjct 26664 CAAAGATTGATTTTTGCTGGCAAACA 26639 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || ||||| ||||| ||||||||| |||| ||||||||||| ||| | || Sbjct 27328 CATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACTATCACTCTTGAAGTTGAATCTTC 27269 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| | ||||| |||||| ||||| |||||||||||||| || Sbjct 27268 TGACACCATTGACCAAGTCAAAGGCAAAATCCAAGACAAAGAAGGTAT 27221 >seq218 Length=131350 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| || | |||||||||||||| || | || Sbjct 41785 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41726 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| |||||||| || ||||| || || || |||||| Sbjct 41725 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 41666 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| |||||||||||||| | || | || || || || Sbjct 41665 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 41606 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | ||| | || | ||||| | ||||| || Sbjct 41605 ATTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGGTAT 41556 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||||||| || | || ||||||||||| || | || Sbjct 42241 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 42182 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| |||||||| |||||||| || || || |||||| Sbjct 42181 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 42122 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || |||||||| ||||| || || | || || || ||| Sbjct 42121 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAAC 42062 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | || | ||||| | ||||| || Sbjct 42061 ATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 42012 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| || | |||||||||||||| || | || Sbjct 42013 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41954 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| || |||||||| |||||||| || || || |||||| Sbjct 41953 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 41894 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | ||| || |||||||| ||||| | ||| |||| || ||||| || Sbjct 41893 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGA-TGGTCGTACGTTGTCAGATTATAA 41835 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | || | ||||| | ||||| || Sbjct 41834 TATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 41784 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || || || || | ||||| |||||||| || |||| Sbjct 42469 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGA---GTCC 42413 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || | ||||| || ||| ||| |||||||| || ||||| || || || ||| Sbjct 42412 AATGATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGAT 42353 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| || ||||| | ||| || |||||||||||||| | || | || ||||| Sbjct 42352 CAACAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTAT 42293 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || | ||| | || | ||||| | ||||| || Sbjct 42292 AATATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 42240 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| || | ||||| |||||||| || | || Sbjct 41557 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 41498 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| |||||||| || ||||| || || || ||||| Sbjct 41497 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 41438 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || |||||||||||||| | || | || ||||| || Sbjct 41437 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAAT 41378 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || | ||| | || | ||| | |||||||| Sbjct 41377 ATTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGG 41331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434857533169920