Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_029022.1 Length=46895 Score E Sequences producing significant alignments: (Bits) Value seq6395 102 2e-17 >seq6395 Length=1081 Score = 102 bits (112), Expect = 2e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 11208 TTATAATCACTAATGATTGTTGCAACCATATCTTCTGCAACTTCATTTCCAGTAGCTTCT 11267 ||| ||||| | || ||||| |||||| ||||||| |||| || || |||||| Sbjct 853 TTAAAATCATTTATAGTTGTTTGAACCATTTCTTCTGGCGTTTCAGAACCCGTTGCTTCT 794 Query 11268 TTTATAGATGAAATTTCTAAGCATTCTTTCATAGTTGCCACTGGATTACCTCCAATTGAA 11327 | | | |||| ||| | ||| | | ||||| || || || ||||| ||| Sbjct 793 TGAACATGAGAAAGTTCCAGATGTTCCCTTAATGTTGCTACAGGTTTTCCTCCCTTTGTT 734 Query 11328 AGCTGTCTTTCAGCCAGTTCATCAATATGAAGTGCAGCTTCGTTATAAAGTTCTTCAAAT 11387 | | |||||| | |||||| | || | || |||| |||||||| ||||||||| Sbjct 733 AATATACGTTCAGCTACTTCATCTAAATTCAATGTTACTTCATTATAAAGCTCTTCAAAT 674 Query 11388 TTTAGATGTAAAGTGAAAAATTGTTGACCTTTAACGAACCAGTGGAAGTTATGAAGTTT 11446 ||| ||||||||| |||||||| | |||| | || |||| || | ||||||||||| Sbjct 673 TTTGCATGTAAAGTAAAAAATTGATTACCTGTTACATACCAATGATAATTATGAAGTTT 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149922464783064