Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_029045.1 Length=60216 Score E Sequences producing significant alignments: (Bits) Value seq11023 814 0.0 >seq11023 Length=509 Score = 814 bits (902), Expect = 0.0 Identities = 486/509 (95%), Gaps = 0/509 (0%) Strand=Plus/Plus Query 46388 CCCGATCGCCGCGCCCACACGGCCAATAACAAACAGCACACCGCAGATAATCAATACAAA 46447 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 CCCGATCGCCGCGCCCACACGGCCAATGACAAACAGCACACCGCAGATAATCAATACAAA 60 Query 46448 CAGCGTTAGCGCAGCGATCTTCTTCATGGTGGCCCCTTTATTCCTTCGGTGGATTTGATT 46507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAGCGTTAGCGCAGCGATCTTCTTCATGGTGGCCCCTTTATTCCTTCGGTGGATTTGATT 120 Query 46508 GGTGGCGATTTAGCCAGATGACAATCCCGGCAGTATAATTGATCACGCCGAGCAACTCCC 46567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GGTGGCGATTTAGCCAGATGACAATCCCGGCAGTATAATTGATCACGCCGAGCAACTCCC 180 Query 46568 TAACCCTTTGGTCATGCGTTGGCAGGTTGACGCCTTCTACGACCTTCTTGCACACCTGAT 46627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TAACCCTTTGGTCATGCGTTGGCAGGTTGACGCCTTCTACGACCTTCTTGCACACCTGAT 240 Query 46628 ATACCAAGCCGAGCGGACTACCGATCAGGTCGGAAATGGCGTTCATTGGCTGCTGGTGGA 46687 | |||||||||||||| |||||||||||||| |||||||||||||| ||||||||| || Sbjct 241 AGACCAAGCCGAGCGGGCTACCGATCAGGTCAGAAATGGCGTTCATCGGCTGCTGGCTGA 300 Query 46688 AAGGCAGGTCGTTTGCGTGGCGTTCCCGACCTTTACCATACGCGGCTTGCGTCAGCGCAT 46747 | |||||||| || |||||||| || || ||||||||||||||||||||||||||||||| Sbjct 301 ACGGCAGGTCATTGGCGTGGCGCTCGCGCCCTTTACCATACGCGGCTTGCGTCAGCGCAT 360 Query 46748 CATGCAGCACTTTGACTAATTCGGAATAATCGTTGCAGTCTTTGACGTTCCGGAATTCGT 46807 | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 361 CGTGTAGCACTTTGACTAATTCGGAATAATCGTTGCTGTCTTTGACGTTCCGGAATTCGT 420 Query 46808 ACTGCCATGACCGGGCGGACGACGGGGCAACGGCTTCCGGCGTGACGAGGGCTTCGTTAA 46867 || |||||||||||| || |||||| ||||| |||||||||| ||||||||||||||||| Sbjct 421 ACCGCCATGACCGGGAGGCCGACGGTGCAACTGCTTCCGGCGCGACGAGGGCTTCGTTAA 480 Query 46868 GCGGCCAGCCCTGCGCGAAGGCAAACATG 46896 |||||||||||||||||||||| |||||| Sbjct 481 GCGGCCAGCCCTGCGCGAAGGCGAACATG 509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192543997390256