Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq9243 224 8e-54 >seq9243 Length=648 Score = 224 bits (248), Expect = 8e-54 Identities = 301/408 (74%), Gaps = 13/408 (3%) Strand=Plus/Plus Query 125923 TTTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAA- 125981 |||| || |||| ||||||||| || | || |||| ||||| | | |||||| | || Sbjct 244 TTTAAACAGCAACAGGTGCTTTGATCGATGGATGTGGGTCATATTCT-TCAATTTTCAAG 302 Query 125982 TCTTCATAATT-AATATCAAAAATTGA---TTTATCTGTATTAATTTTTAATTGAGGTGG 126037 ||||| ||||| |||||| |||||||| ||| |||| ||| ||||||| |||||| Sbjct 303 TCTTC-TAATTCAATATCGAAAATTGACTTTTTCTCTGAATTTATTTTTAGTTGAGGCA- 360 Query 126038 TAGATAACTATCTCTTGA--TAATTGTGTATGTA-TTGCATCCATATGATTGGAATAAAT 126094 || || || || || ||| || || |||| || | |||||| |||| || Sbjct 361 -AGTTACGCGGTTCGCGACTTAGCTGTTCATTTACTTGC-TCTAAATGATTTAAATAGAT 418 Query 126095 ATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAAC 126154 ||||| ||||||||| |||||| ||||||||| || || | |||||||| | ||||| Sbjct 419 ATGTGTATCTCCAAAGCTATGAACGAATTCACCAACATCTAACCCACATTCATGTGCAAT 478 Query 126155 AAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGC 126214 | |||||| | || |||||| || |||||||| || || |||||||||| ||| || Sbjct 479 TAAATGTGTTAACAATGCATAAGAAGCGATATTGAACGGCACTCCTAAAAATACATCGGC 538 Query 126215 ACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGT 126274 |||||||||||| ||||||||| | ||| || || ||| |||||||| || | || Sbjct 539 ACTTCTTTGATACAATTGACAAGAAAGTTTCCCTTCCGCTACATAAAATTGGAAAAATGA 598 Query 126275 GTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGATTCCATGC 126322 || ||||||||||| ||||| ||| | ||| | |||||||| || Sbjct 599 ATGACAAGGTGGTAAAGCCATCTCATCAACTTCTGCTGGATTCCACGC 646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408542646237572