Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq575 120 2e-22 seq1465 113 3e-20 seq256 105 5e-18 seq218 89.7 4e-13 >seq575 Length=50698 Score = 120 bits (132), Expect = 2e-22 Identities = 172/239 (72%), Gaps = 14/239 (6%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || |||||||||||||| ||||| |||||||| ||| ||||| | || || ||||| Sbjct 23139 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 23080 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | ||| ||| |||| |||||| ||||||| || |||||||| | || Sbjct 23079 AGCGA-----TACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCC 23025 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG--CAGCTTGTC 27959 ||| || ||||| ||||| ||||| || ||||| || || || | ||| || ||| || Sbjct 23024 CGGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCA-CTT-TC 22967 Query 27960 CGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||||| || |||||||| || || || ||||| | ||||| || || |||| Sbjct 22966 CGATTACAATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCG 22908 >seq1465 Length=43607 Score = 113 bits (124), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || |||||||| || ||| |||||| |||| || || | | Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || || | || ||| || || ||||||||||| |||| ||| | Sbjct 26952 GATACCATTGACCAA--GTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATC 26895 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || |||||||| ||||||||||| || | ||| | |||||| ||||||| Sbjct 26894 AGCAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACA 26835 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | |||||||| ||| ||| | ||| | || | ||||| Sbjct 26834 ATATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTT 26795 >seq256 Length=68436 Score = 105 bits (116), Expect = 5e-18 Identities = 166/234 (71%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||| ||||| ||| ||||| | || || || || Sbjct 65864 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 65805 Query 27850 GACGATGTACAATCGGTCAAACAAAA---AATAGCC--GACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| |||| |||| || | | |||||||||||| |||| | Sbjct 65804 GA-----TACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAG 65750 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | ||||| ||||| |||||| | || || | ||| | | | || || | Sbjct 65749 ATCAGCAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACT 65690 Query 27965 ACAACATCCAAAAAGAG--AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || ||||||||| | ||||| |||||||| | ||| | ||||| || Sbjct 65689 ACAATATTCAAAAAGAGTCAACACTT--CATTTGGTGCTTCGTCTTCGTGGTGG 65638 >seq218 Length=131350 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| || ||||| ||||| |||||||||||||| ||||| |||| ||| ||||| || || Sbjct 42584 GGATCAACAACGCTTAATCTTTGCCGGAAAACAGTTGGAAGACGGACGTAGCTTATCTGA 42525 Query 27963 TTACAACATCCAAAAAGAG 27981 ||||||||| || |||||| Sbjct 42524 TTACAACATTCAGAAAGAG 42506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355813842130692