Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq256 165 2e-35 seq218 125 2e-23 seq1465 122 2e-22 seq645 120 7e-22 seq325 98.7 2e-15 seq770 91.5 3e-13 seq1727 86.0 1e-11 >seq256 Length=68436 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || || |||||||| ||||||||||| ||||||||||| | |||||| Sbjct 66100 CGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTA 66159 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| || || ||||| ||||| ||||| ||||| ||||| || |||| |||| Sbjct 66160 CGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCT 66219 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || || ||| ||| || | || || ||||| || |||||| || || Sbjct 66220 TCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGG 66279 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || || || || || | ||||| Sbjct 66280 GTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 66320 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| || |||||||||||||||||||||| ||| || | |||||| Sbjct 65425 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 65484 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || ||||| || | ||||| || || ||||| | || || || || Sbjct 65485 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 65544 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || | || ||||| ||||| ||| ||||| || || |||||| Sbjct 65545 TGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTC 65604 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || |||||||| | ||||| Sbjct 65605 TTACCAGTAAGTGTTTTTACAAAAATTTGCAT 65636 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| || ||||||||||| || || || || | |||||| Sbjct 65643 ACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGT 65702 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || || || || ||||| || || ||||| || || || |||| || Sbjct 65703 TCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACC 65762 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || |||||| ||| || | |||||||| || || ||||| || | Sbjct 65763 TTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAA 65822 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| || ||||| || ||||| | ||||| Sbjct 65823 AGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || || ||||||||||| |||||||| || || || || | |||||| Sbjct 65871 ACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGT 65930 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||| || || || || || ||||| || || ||||| ||||| || || | || Sbjct 65931 TCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACC 65990 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| || || || || ||| || | |||||||| || ||| || || || | Sbjct 65991 CTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAA 66050 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| |||||||| || | ||||| Sbjct 66051 GGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 >seq218 Length=131350 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| || || ||||| || ||||| |||| | || | |||||| Sbjct 41574 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 41633 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || |||||||| | ||||||||| || || || | |||||||| || Sbjct 41634 TCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCT 41693 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| ||| || | || ||||| |||||| || || || ||||| || || Sbjct 41694 TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 41753 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | ||||| Sbjct 41754 TTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 >seq1465 Length=43607 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || ||||| ||||| |||||||| || ||||| | | ||| | ||||||| Sbjct 26801 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 26860 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || ||||| | |||||| || || || |||| ||||| ||||| Sbjct 26861 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCT 26920 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || | || ||||| || ||| || || || ||||| || || Sbjct 26921 TGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTT 26980 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | ||||| Sbjct 26981 TTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 Score = 105 bits (116), Expect = 2e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| |||||||||||||| ||||| || | | || | ||||||| Sbjct 27029 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 27088 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||| || || |||||||| | |||||| || || ||||||| Sbjct 27089 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAA 27134 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 ||| ||||| || || || | | |||||| || ||||| | ||||| ||||| || || Sbjct 26638 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 26697 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 |||| || || | ||| || || ||||| |||||| || ||||| || || || || Sbjct 26698 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 26757 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||||||||| | |||||| Sbjct 26758 GGTGAGGGTCTTTACAAAAATCTGCAT 26784 >seq645 Length=46104 Score = 120 bits (132), Expect = 7e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| ||||| || ||||| |||| ||| ||||||||||||| | |||||| | | Sbjct 29519 TCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGACAA 29578 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||| ||||| | ||| |||| || || |||||||||||||| |||||||||| Sbjct 29579 GGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAAT 29638 Query 211010 TCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| | ||||| Sbjct 29639 TCCTTCTTTGTCATAAATCTT 29659 >seq325 Length=113037 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 210923 CTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGA 210981 |||||| ||||| |||||||| | ||||| | || |||||| | || | || || | Sbjct 80828 CTCTTTCTGGATATTATAATCACTCAAGGTACGCTC-ATCTTCTAATTGACTTCCAGCAA 80886 Query 210982 AGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGT 211041 | |||| ||||| ||||| |||| |||||||||||| |||||||| ||| || Sbjct 80887 AAATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTA 80946 Query 211042 TTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTA 211101 |||||| ||||| || ||||| | || | ||| ||||| || || || |||| Sbjct 80947 GGCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTA 81006 Query 211102 CAAACACCTGCAT 211114 |||| |||||||| Sbjct 81007 CAAATACCTGCAT 81019 >seq770 Length=40003 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| || ||||| || | || ||||||| ||| || |||||||| | | || Sbjct 15274 ACGTAGTCTAAGTACAAGATGCAACGTAGACTCTTCTTGAATATTATAATCTGATAAAGT 15215 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||| |||| ||||| || || || |||| ||||| ||||||||||||| || Sbjct 15214 TTTTCCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCC 15155 Query 211013 TTCCTTGTCCTGGATCTT 211030 ||| || | || || ||| Sbjct 15154 TTCTTTTTTCTCGACCTT 15137 >seq1727 Length=26445 Score = 86.0 bits (94), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 210992 TTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGT 211051 |||||| ||||||| ||| | ||| || ||| ||||| || || | || || || Sbjct 20504 TTGTTGATCAGGAGAAACCAC---CTTATCTTGGGTCTTTGCCTTGACTTGATCAATAGT 20448 Query 211052 GTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111 ||||| |||||| ||||||||||| |||||||| | |||||| |||||||| | ||| Sbjct 20447 ATCAGAAGATTCAACTTCGAGAGTGATAGTCTTTCCAGCGAGAGTTTTTACAAAAATCTG 20388 Query 211112 CAT 211114 ||| Sbjct 20387 CAT 20385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158985721094540