Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq256 143 2e-29 seq575 140 2e-28 seq1592 134 9e-27 seq1465 122 6e-23 seq218 122 6e-23 seq566 111 1e-19 seq1775 89.7 3e-13 >seq256 Length=68436 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||||||||| || ||||| || ||||| || |||||||| || | Sbjct 66320 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 66261 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | ||| ||||||| ||||||||||| | || ||||| || Sbjct 66260 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 66201 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || ||||||||||| ||||||| || || | ||||| ||| Sbjct 66200 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 66141 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| || | ||| |||| Sbjct 66140 ATTCAAAAAGAGTCAACTCTTCATCTAGT 66112 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || |||||||| || ||| | |||||||| || | Sbjct 65864 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 65805 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | ||||| ||| ||| |||||||||||| | || |||||||| Sbjct 65804 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 65745 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| |||||||| || || | ||| || | || ||||| Sbjct 65744 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 65685 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| ||| | ||||| || Sbjct 65684 ATTCAAAAAGAGTCAACACTTCATTTGGT 65656 >seq575 Length=50698 Score = 140 bits (154), Expect = 2e-28 Identities = 163/217 (75%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| ||||| ||||| |||||||| || || || ||||| || ||| | |||||||| Sbjct 23142 TTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAA 23083 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | || || | || | | | ||| |||||||| || |||||||| | || || Sbjct 23082 AGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCG 23023 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCG 23782 |||||||| |||||||||||||| || ||||| | ||||| | ||| |||||| || Sbjct 23022 GATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTT--CCG 22965 Query 23783 ATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||| || |||||||| || |||||||| || || Sbjct 22964 ATTACAATATTCAAAAAGAATCAACATTACACTTGGT 22928 >seq1592 Length=32188 Score = 134 bits (148), Expect = 9e-27 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 23622 CGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA 23681 ||||||||| | || |||||||| | || | ||||| || | | || || |||| Sbjct 12622 CGTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACAATTGA 12563 Query 23682 AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAAT 23741 ||||||| ||||||| |||| ||||||||| |||| ||||||||||| | ||||| Sbjct 12562 TCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAAT 12503 Query 23742 ATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGA 23801 ||||| || || ||||| ||||| | || |||||| | |||||||| ||| || Sbjct 12502 TTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGTTGA 12443 Query 23802 GTCCACATTACATTTAGTTTTAAGGTT 23828 |||||| |||||||||| ||||| || Sbjct 12442 GTCCACGCTACATTTAGTATTAAGATT 12416 >seq1465 Length=43607 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || || || || ||||| || ||||| ||||| || ||| | Sbjct 27012 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 26953 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | ||| || ||| ||||||||||| | || || ||||| Sbjct 26952 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 26893 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || |||||||| |||||| ||||||| | ||| || || |||||||| Sbjct 26892 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 26833 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 26832 ATCCAAAAGGAGTCAAC 26816 Score = 105 bits (116), Expect = 5e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || ||||| || ||||| |||||||| || | Sbjct 26784 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 26725 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || ||||| | | || ||| ||| |||||||||||| | || ||||||||| Sbjct 26724 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 26665 Query 23731 CAGCGTTTAATATTTGCCGGCAAACA 23756 || | || || ||||| |||||||| Sbjct 26664 CAAAGATTGATTTTTGCTGGCAAACA 26639 >seq218 Length=131350 Score = 122 bits (134), Expect = 6e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 42241 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 42182 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| ||| ||| || ||||||||| | || ||||||||| Sbjct 42181 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 42122 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || || |||||| | ||||| | || || || || || ||| Sbjct 42121 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAAC 42062 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| ||||| Sbjct 42061 ATTCAAAAAGAATCCAC 42045 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || ||||| || ||||| || ||||| ||||| || ||| | Sbjct 41785 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41726 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | ||| ||| ||| || || |||||| | || ||||||||| Sbjct 41725 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 41666 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || ||||| |||||| ||||||| | || |||||| || || || Sbjct 41665 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 41606 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 41605 ATTCAAAAGGAATCAAC 41589 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || |||||||| || ||||| || ||||| ||||| || ||| | Sbjct 42013 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 41954 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | ||||| || ||| || ||||||||| | || ||||||||| Sbjct 41953 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 41894 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || || || || |||||| | ||||| | || || || ||||| || Sbjct 41893 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 41834 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 41833 ATTCAAAAAGAATCAAC 41817 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || ||||| || || || ||||| || |||| Sbjct 42469 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 42410 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | ||| ||| ||| || || ||||| | || ||||||||| Sbjct 42409 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 42350 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || ||||| || || || |||||| ||||||| | || ||||| ||||| || Sbjct 42349 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 42290 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 42289 ATTCAAAAAGAATCAAC 42273 >seq566 Length=43303 Score = 111 bits (122), Expect = 1e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23709 AGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGA 23768 ||||||| |||| ||||||||||| ||||| | | ||||| |||||||| ||||| || Sbjct 34370 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 34429 Query 23769 ACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTT 23828 |||||||||| ||||| || |||||| | || || || |||||||||| ||||| || Sbjct 34430 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 34489 Query 23829 GCGAGGAGG 23837 |||| || Sbjct 34490 AAGAGGTGG 34498 >seq1775 Length=41804 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 || || |||||||| || | || || ||||| || || || ||| | | | | || Sbjct 13821 CAAATATTCGTTAATACATTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 13762 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || || | | ||||| |||||||| || |||||||| |||| ||||||||||| Sbjct 13761 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAGGGATACCTCCAGATCAACAA 13702 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 | ||| | ||||| || | ||| ||||| | || || ||| |||||||| ||| Sbjct 13701 AGATTAGTTTTTGCTGGTATGTTACTTGAAGATGGCCGTACGTTATCGGATTACAAGATA 13642 Query 23794 CAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| | |||||| ||||| | || || || Sbjct 13641 AAAAAACATTCCACAATACATCTGGTATTGAG 13610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337963478167568