Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq256 140 8e-28 seq218 131 4e-25 seq1465 105 2e-17 seq575 102 2e-16 seq325 87.8 4e-12 >seq256 Length=68436 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || ||||||||||||||||| | |||||| |||| | || Sbjct 65871 ACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGT 65930 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || |||||||| || || ||||| ||||| || || ||||| Sbjct 65931 TCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACC 65990 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| || || || || |||||||| || |||| || ||||| || Sbjct 65991 CTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAA 66050 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || | || |||| ||| | |||||| Sbjct 66051 GGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| ||||||||||||| || ||||| | | ||| | |||||| Sbjct 65425 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 65484 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | ||||| || || || || ||||| || || ||| Sbjct 65485 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 65544 Query 225622 TGGATCTTTTGCTTCACAGCT--TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 || | ||||| || | || || ||||| || || | ||| || || | || |||| Sbjct 65545 TGAA--TTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 65602 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||||||| || | |||||| Sbjct 65603 TCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 65636 Score = 107 bits (118), Expect = 5e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || || |||||||| | |||||| || | | || Sbjct 65643 ACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGT 65702 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || || ||||| || || ||||| || || || |||||||| Sbjct 65703 TCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACC 65762 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| |||||| || || |||||||| || || | || || || || Sbjct 65763 TTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAA 65822 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | |||||| | || | |||||| Sbjct 65823 AGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 >seq218 Length=131350 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||||||||||||||| | || || || | ||| || | |||||| Sbjct 42030 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 42089 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||||||||| | |||||||| || || || |||||||| || ||| Sbjct 42090 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCT 42149 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| || || || ||||| || |||| || || || | ||||| || Sbjct 42150 TGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTT 42209 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| ||||| | ||| | |||||| Sbjct 42210 TTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || |||||||| ||||||||||| | ||| ||||| | ||||| Sbjct 41337 CGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTA 41396 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | || || ||||||||||| | ||||| || || || ||||||||| Sbjct 41397 CGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 41456 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| |||||| || || || ||||| || |||| || || || | Sbjct 41457 TCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGG 41516 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | || || | ||| | |||||| Sbjct 41517 GTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 41557 Score = 122 bits (134), Expect = 2e-22 Identities = 108/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||||||||| | ||| ||||| | |||||| | ||||||| Sbjct 42258 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 42317 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || ||||||||||| | |||||||| || || ||||| |||||||| ||| Sbjct 42318 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 42377 Query 225622 TGGATCTTTTGCTT 225635 || ||| ||||||| Sbjct 42378 TGAATC-TTTGCTT 42390 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||||||||| | ||| ||||| | ||| || | |||||| Sbjct 41802 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 41861 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||||||||| | |||||||| || || || |||||||| || ||| Sbjct 41862 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCT 41921 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || || ||||| || |||| || || || | || || || Sbjct 41922 TGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 41981 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | |||||| Sbjct 41982 TTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||| ||||| | ||| || || | ||||| | |||||| Sbjct 41574 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 41633 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || |||||||| | |||||||| || || || ||||||||||| ||| Sbjct 41634 TCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCT 41693 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| || || || ||||| || |||| || || || | || || || Sbjct 41694 TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 41753 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | |||||| Sbjct 41754 TTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 >seq1465 Length=43607 Score = 105 bits (116), Expect = 2e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||| || |||||||||| ||| || |||| |||||| | |||||| Sbjct 27029 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 27088 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| || ||||||||||| | ||||| || || || ||||||||| Sbjct 27089 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 27139 >seq575 Length=50698 Score = 102 bits (112), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT--TCTCCCATCTTCTAGCTGCTTCC 225574 || ||||||||||| | ||||||||||| ||||| | |||||||||| ||| || | Sbjct 22940 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTTCTAACTGTTTAC 22997 Query 225575 CAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCT 225634 |||| || || | |||||||| || || || || ||||| || ||||| || |||| | Sbjct 22998 CAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTT 23057 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | || |||||||| || |||| || ||||| || || || || || || | | Sbjct 23058 TGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTG 23117 Query 225695 TTTTTATGAACACTTGCATTTT 225716 |||| | || | |||||| || Sbjct 23118 TTTTAACAAAAATTTGCATGTT 23139 >seq325 Length=113037 Score = 87.8 bits (96), Expect = 4e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 ||||| |||| ||| ||||| ||| || | | ||||||||| || | ||||| || Sbjct 80829 TCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGACTTCCAGCAAAA 80888 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCAC-AGC 225641 |||| ||||| || || ||||| |||||||||||||||||||| || || || Sbjct 80889 ATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTAGG 80948 Query 225642 TTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTAT 225701 | |||||| || || | || || || || || | ||| || || || | ||||||| Sbjct 80949 CT-GATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTAC 81007 Query 225702 GAACACTTGCAT 225713 || || ||||| Sbjct 81008 AAATACCTGCAT 81019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192360132890024