Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq575 100 2e-16 seq1465 91.5 1e-13 >seq575 Length=50698 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGG--AATCTT 101087 |||| ||| || |||||||||||||||||||||||||||| | ||| | ||||| Sbjct 22928 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTT 22985 Query 101088 CCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGG 101147 | || ||||| || ||| |||| | | |||||| || ||| | |||||||| || Sbjct 22986 CTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTT 23045 Query 101148 CAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGT 101205 |||||||| ||| || | | | || || | || || ||| | ||||| || Sbjct 23046 GAATTTTTTCTTTGACTTTATCGATGGTATCGCT--ACTTTCAACTTCTAAAGTAATGGT 23103 Query 101206 TTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATTACAATATATTTTTT 101256 ||| || || | |||||||| |||||||||||| ||| || | |||| || Sbjct 23104 TTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTA-AAAAAATTTATT 23153 >seq1465 Length=43607 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101041 AGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCC 101100 |||||| || ||||| ||||||||||| | || || ||||||||||||||| || Sbjct 26815 AGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACC 26874 Query 101101 CGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTT 101160 ||| | || | | ||| || || ||| | |||||||||||| ||| || ||| Sbjct 26875 GGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTT 26934 Query 101161 CACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGT 101220 || | | | | || |||| |||| | ||| | ||||||||||| || || | || Sbjct 26935 AACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGT 26994 Query 101221 TTTAATAAAAATTTGCAT 101238 |||| ||||||||||| Sbjct 26995 CTTAACGAAAATTTGCAT 27012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409604901271764