Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq54 228 7e-55 >seq54 Length=215934 Score = 228 bits (252), Expect = 7e-55 Identities = 323/449 (72%), Gaps = 4/449 (1%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||| ||| |||||| || || ||||| || ||||| |||||||| ||||| |||| ||| Sbjct 102350 AACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAA 102291 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 ||| |||||||||||||| ||||| || || || |||| | | || Sbjct 102290 ACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAG 102231 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTTAA 4425 || || | |||| |||||||||||||| ||||| | |||| | ||||| ||| | Sbjct 102230 TGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC-GTTCA 102172 Query 4426 TTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 | |||||||| | || |||| || | ||| ||||| ||||||||||| || || |||| Sbjct 102171 TACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTT 102112 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-TATCCAAACAAT 4544 | | || ||| ||| || | | | | | ||| | || ||| | || || Sbjct 102111 CCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTGAATAAG 102053 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 | ||| ||||||||||||||||| ||||| |||| ||| |||||||| ||||| ||| Sbjct 102052 AGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTT 101993 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 ||||| ||||| | ||||| || || | |||||| || | || || | ||||||||| Sbjct 101992 AATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAG 101933 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTAC 4693 ||||| ||||| || |||||||||||||| Sbjct 101932 AATATTCCTTCAACAGCGGCAAACGCTAC 101904 Score = 188 bits (208), Expect = 6e-43 Identities = 219/295 (74%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 4801 TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 ||| | |||| || | ||||||| || || | ||| |||||||| ||||| |||| Sbjct 101717 TTTGAGATGGCTCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATAT 101658 Query 4861 TTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTAC 4920 |||| || ||||||||||| ||||| ||||| ||||||| | ||| ||||| |||| Sbjct 101657 TTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTAC 101598 Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| | ||| ||||| ||||| || || ||||| || ||| ||||| || ||||||| Sbjct 101597 TAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAA 101538 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTT---TTTCCAGTGGGGCAAATCTT 5037 | ||||| |||||| | | ||| ||| |||||||| | ||| | || ||| | Sbjct 101537 CGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCT 101478 Query 5038 TAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 | | | |||||||| |||||||||||||| || ||||| || ||||||||||| Sbjct 101477 TGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACAT 101423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426991328548268