Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq3016 93.3 3e-14 >seq3016 Length=3907 Score = 93.3 bits (102), Expect = 3e-14 Identities = 118/160 (74%), Gaps = 7/160 (4%) Strand=Plus/Plus Query 5273 GGCGTGTAGCTCAGATTGGTGAGAGCGCTCGGTTGAAACCCGAGAGGTCGCAGGTTCGAG 5332 ||| | |||||||| | ||| ||||||| || ||| | || ||||||| |||||||| Sbjct 1018 GGCCTATAGCTCAGCT-GGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGATGGTTCGAG 1076 Query 5333 CCCTGCCGCGCCGGCCAT-----TTCGACGTAGCTCAATTGGCAGAGCGTCCGACTGTTA 5387 || ||| |||| | ||| |||||||| | || ||||| ||| |||||| Sbjct 1077 TCCATTTAGGCCCACCATAATATTCCGAAGTAGCTCAGT-GGTAGAGCAACCGGCTGTTA 1135 Query 5388 ATCGGATGGTTGAAGGTTCGAGTCCTTCCGTCGGAGCCAT 5427 | ||| |||| | ||||||||||||| || |||||||||| Sbjct 1136 ACCGGTTGGTCGTAGGTTCGAGTCCTACCTTCGGAGCCAT 1175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299280757193528