Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1647 408 6e-109 seq54 217 2e-51 seq370 102 1e-16 >seq1647 Length=14880 Score = 408 bits (452), Expect = 6e-109 Identities = 686/986 (70%), Gaps = 10/986 (1%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG-CACATCAATG 77982 |||||||||||| ||||||||||| || ||||| |||| || || || || Sbjct 3414 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 3355 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | | ||| | | ||| | ||||||||| ||||| | | ||| || ||| || Sbjct 3354 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 3296 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | ||| || | Sbjct 3295 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 3236 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||| |||| |||||| | ||||| ||| || || | | || || ||||| || |||| Sbjct 3235 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 3176 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 | ||||| | |||||| || || ||||||||||| | ||||| |||||||| || || | Sbjct 3175 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 3116 Query 78223 ATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCC 78282 | ||||||||||||| ||||||| ||| | || ||||| ||| |||| | | Sbjct 3115 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 3056 Query 78283 CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCT 78342 | || || ||||| ||||||| || | ||||| |||||| ||||| ||||| |||| Sbjct 3055 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 2996 Query 78343 CTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 |||| ||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 2995 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 2937 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461 || |||||||| || ||||||||||| || ||||| | ||||| || | |||||||| Sbjct 2936 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 2877 Query 78462 GTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521 ||||||||||| | ||| || || | ||||| || |||||||| ||||| | |||| Sbjct 2876 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 2817 Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 || || || | || | || | |||| || | || ||| |||| | |||| Sbjct 2816 TGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 2757 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTA 78641 ||||| |||||||| || ||| | | ||||| || ||||| || |||||| ||||| Sbjct 2756 TTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTTT 2697 Query 78642 TCTTTGTATTTGGTAACAATATCCATGACAGTAGTT---GAAATAATAGGAGATCGTACA 78698 || | || | ||||||| | ||| || ||||| || | | ||| Sbjct 2696 TCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTC 2640 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGttttttt 78758 || |||| ||||| | ||| ||| | | |||||| | |||| ||| | |||||| Sbjct 2639 CCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTA 2580 Query 78759 GTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 ||||| || || |||||||| ||||| || | ||||| || | ||||| || |||||| Sbjct 2579 GTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGT 2520 Query 78819 TGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACC 78878 | || || | || || ||||||| || ||| ||||||| || | ||| | || Sbjct 2519 TTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACA 2460 Query 78879 CCATTATATAGTCCTTGAATAACTTT 78904 || | ||| | |||| ||| || || Sbjct 2459 CCTTGATAAACTCCTGAAATGACCTT 2434 Score = 176 bits (194), Expect = 6e-39 Identities = 250/350 (71%), Gaps = 4/350 (1%) Strand=Plus/Minus Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173 ||| ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 4443 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 4384 Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 ||||| | | ||||||| ||||| ||||| | |||||| ||||| ||||| ||||| Sbjct 4383 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 4324 Query 77234 CACCAATAAACTATTTCTGAGACCATGTGTTCTGAT--TTTATCTTTTAGATATTTCCAA 77291 | |||||| ||||| | ||||||| |||||| ||| | ||| | | |||||| Sbjct 4323 GAGCAATAATGAATTTCGTACACCATGT--TCTGATATTTTTTGTTTCAACAAATTCCAA 4266 Query 77292 TCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351 ||||| | ||| | ||| |||||| ||| | ||||||||||| ||| || || | | Sbjct 4265 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 4206 Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCC 77411 |||||| | ||| | ||||| || || | ||| | ||||||||| ||||| Sbjct 4205 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 4146 Query 77412 AATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 77461 ||||| || | ||| ||||| || || || | |||||| || || | ||| Sbjct 4145 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGC 4096 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC 77722 |||||||||| ||| |||||| || | ||||| || || || |||| | | | | Sbjct 3746 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 3687 Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| | ||||| ||||| | ||||||||||||||| || || ||||||||||| || Sbjct 3686 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 3627 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 || ||| || || || || || || ||| | || || || ||||| ||||| || Sbjct 3626 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 3567 Query 77843 TTCGATAATAGATTTCCAGAC 77863 ||| | ||| | | ||||||| Sbjct 3566 TTCAAGAATTGCTGTCCAGAC 3546 >seq54 Length=215934 Score = 217 bits (240), Expect = 2e-51 Identities = 325/455 (71%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||||||||| ||||||||| || || ||||| || || ||||| ||||| |||| Sbjct 102353 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 102294 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATA-AAtttttttAAATC 47955 || || |||||||||||||| ||||| ||| |||||| |||||| | | | Sbjct 102293 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 102235 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT-TTCACAA 48014 | | | | | | |||||| || || ||||| |||||| ||||||| | ||| | Sbjct 102234 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 102176 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || | |||||||||| || || || | ||| |||||||| || || || Sbjct 102175 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 102116 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA-----TACAACAA-ATGT 48128 || ||| |||| || | | ||| |||| ||| |||| | || || ||| Sbjct 102115 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCACGAAGATGA 102062 Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 102061 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 102002 Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 ||||| || | || ||||| | ||| | ||| || | |||||| |||| |||||||| | Sbjct 102001 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 101942 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||||||||| ||||| || || ||||| || Sbjct 101941 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGC 101907 Score = 152 bits (168), Expect = 7e-32 Identities = 215/300 (72%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 |||| ||| || || || |||||||| || || |||||||| || ||||||||| Sbjct 101697 TAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGAAAT 101638 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 || ||||||||||| ||||||| || || || || ||| ||| ||||| | ||||| Sbjct 101637 CCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTT 101578 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 ||||| || || ||||| || ||||| || || || || || |||||| ||||| Sbjct 101577 TCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTT 101518 Query 48591 TCGTTGGAAGTCAGTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647 || | | |||||| | ||| ||||| ||||| || || | || ||||| ||| Sbjct 101517 TCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCA 101458 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATAT-CACTGTATTGGAT 48706 | ||||||||||| || || || ||||| ||||| | ||| || | ||| |||| ||| Sbjct 101457 ACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 101398 >seq370 Length=116867 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 78348 CTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 78407 || ||||| |||| | | | ||| ||||| |||||||| | || || ||| Sbjct 20320 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 20379 Query 78408 TTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 78467 ||||| || || ||| |||||| ||||| |||| || || | || ||| || |||||| Sbjct 20380 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 20439 Query 78468 ATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGA 78527 ||||||| || || || | ||||||||| | | |||||||||||||| || || Sbjct 20440 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 20499 Query 78528 GGTCTTTCAAC 78538 ||||||||||| Sbjct 20500 GGTCTTTCAAC 20510 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 78751 GtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAAT 78810 ||||||||||||||||||||| |||||| | || |||||||| || | ||||||||||| Sbjct 20886 GTTTTTTTGTTTCCTTGTGTAAATTAGAAATTGCAATTCTTGCCGCCAAAATAGCATAAT 20945 Query 78811 CAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAG 78870 ||||||| | ||| | || || |||| ||||||||| |||| | || | || Sbjct 20946 CAGGATGATTACAAGTTAGATATGCAGCAGTTTCAGCCGCTAAATTATCAAGTTCCACAG 21005 Query 78871 TTGTGACCCCATTATA 78886 | ||||| || | ||| Sbjct 21006 TGGTGACACCCTGATA 21021 Score = 93.3 bits (102), Expect = 6e-14 Identities = 197/292 (67%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591 |||||||||||||| || ||| ||||||||||| ||||||||||| || || Sbjct 19192 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 19251 Query 77592 ATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA- 77650 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 19252 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 19311 Query 77651 -TCTTCCATCT----ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCT 77705 | ||| || | ||||||| | || | || || |||| ||||||||| ||| Sbjct 19312 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 19371 Query 77706 ACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTG 77765 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 19372 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 19431 Query 77766 CCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAA 77817 || ||||| | ||| || |||| ||| || || || |||||| | ||| Sbjct 19432 CCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATC--TATAAATATTAA 19481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694571581101440