Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1647 450 2e-121 seq54 194 2e-44 seq370 113 6e-20 >seq1647 Length=14880 Score = 450 bits (498), Expect = 2e-121 Identities = 697/985 (71%), Gaps = 8/985 (1%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA-CACATCAATG 76577 |||||||||||| ||||||||||| ||||||||| |||| |||| || || || Sbjct 3414 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 3355 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | | ||| | | ||||| ||||||||| ||||| | | ||| || ||| || Sbjct 3354 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 3296 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | || || | Sbjct 3295 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 3236 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| || |||| Sbjct 3235 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 3176 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAG 76817 | ||||| | |||||| ||||| ||||||||||| | ||||| |||||||| || || | Sbjct 3175 CTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTG 3116 Query 76818 ATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGC 76877 | |||||||||||||| ||||||| ||| |||||||| ||| ||| | | Sbjct 3115 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 3056 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || ||||| | ||||| || | || || |||||| || |||||||| |||| Sbjct 3055 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 2996 Query 76938 CTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 |||| |||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 2995 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 2937 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || ||||||||||| || |||||||| ||||| || | ||||| || | |||||||| Sbjct 2936 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 2877 Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 ||||||||| | ||||| ||||| | ||||| || || || || ||||| | |||| Sbjct 2876 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 2817 Query 77117 TGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 77176 || || || || || || || | |||| || | || ||| |||| | |||| Sbjct 2816 TGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 2757 Query 77177 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTG 77236 ||||| |||||||| || ||| | | ||||| || ||||| || ||||| ||||| Sbjct 2756 TTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTTT 2697 Query 77237 TCCTTATATTTGGTAACAATATCCATGACAGTGGT-AGAAATAATTGGAGATCGTATTCC 77295 ||| || || | ||||||| || | | | |||||| |||| | ||| | || Sbjct 2696 TCCGAATTGTTCATCACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 2638 Query 77296 ATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGT 77355 |||| ||||| | ||| ||| | | ||||| | || | | ||| | |||||| || Sbjct 2637 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 2578 Query 77356 TTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTG 77415 ||| || || ||||| || || || || | |||||| || | |||||||| ||||||| Sbjct 2577 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 2518 Query 77416 TGTAGTGCAGGT-GGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTC 77474 || || || | || || ||||||| || ||| |||||||||| | ||| |||| | Sbjct 2517 AGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACAC 2459 Query 77475 CGTTATATAGCCCTTGAATAACTTT 77499 | | ||| | ||| ||| || || Sbjct 2458 CTTGATAAACTCCTGAAATGACCTT 2434 Score = 178 bits (196), Expect = 2e-39 Identities = 262/367 (71%), Gaps = 8/367 (2%) Strand=Plus/Minus Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||| ||||||||||||||||| |||| | || | ||| |||||| || || ||||| Sbjct 4443 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 4384 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||||| | | ||||||| ||||| ||||| | ||| || ||||| ||||| ||||| Sbjct 4383 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 4324 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTGAT--TTTATCTTTTAGATATTTCCAA 75886 | |||||| ||||| | ||||||| |||||| ||| | ||| | | |||||| Sbjct 4323 GAGCAATAATGAATTTCGTACACCATGT--TCTGATATTTTTTGTTTCAACAAATTCCAA 4266 Query 75887 TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCA 75946 ||||| | ||| | || |||||| ||| | ||||||||||| ||| || ||| | | Sbjct 4265 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 4206 Query 75947 TATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCT 76006 |||||| | ||| | || || | ||| |||| | |||||| || || ||| Sbjct 4205 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 4146 Query 76007 AACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC--TTGCGCTTCAAGAC 76064 || ||||| | ||| ||||| || || || | |||||| || || |||||| | |||| Sbjct 4145 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGA- 4087 Query 76065 TATCAAA 76071 |||||| Sbjct 4086 -ATCAAA 4081 >seq54 Length=215934 Score = 194 bits (214), Expect = 2e-44 Identities = 362/523 (69%), Gaps = 23/523 (4%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||||||||| |||||| || || ||| ||||| || || ||||| ||||| |||| Sbjct 102353 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 102294 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATA-AAtttttttAAATC 46444 || || |||||||||||||| ||||| |||||| |||||| | | | Sbjct 102293 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 102235 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT-TTCACAA 46503 | | | | | | |||||| || || ||||| ||||| ||||||| | ||| | Sbjct 102234 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 102176 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || || | || || |||| || || || | ||| |||||||| || || || Sbjct 102175 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 102116 Query 46564 GCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA-----TGCATCAA-ATGT 46617 || |||| ||| || | | ||| |||| ||| |||| |||| || ||| Sbjct 102115 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCACGAAGATGA 102062 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 102061 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 102002 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 ||||| || | || ||||| | ||| | || || | |||||| || | |||||||| | Sbjct 102001 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 101942 Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--G 46795 |||||||||||||| ||||| ||||| || || || ||||| | || | || || | Sbjct 101941 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG--ACGTTCAGCAAATGAAG 101884 Query 46796 CATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 || |||| |||||| | |||||||||| || ||||| Sbjct 101883 ATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTT 101841 Score = 167 bits (184), Expect = 3e-36 Identities = 208/282 (74%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| Sbjct 101676 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 101617 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 | ||| || || || ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 101616 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 101557 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT---TTCATCGGTAGTCAGTTTA 47097 || ||||| || ||||| || || |||||| |||| ||||||| || |||||| Sbjct 101556 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTA---AGTTTA 101500 Query 47098 ---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 | ||| ||||| ||||| || || | || ||||| ||| | ||||| ||||| || Sbjct 101499 TACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCT 101440 Query 47155 TCTGCTTTTTTATACATATTCCATATAT-CACGATATTGGAT 47195 || || ||||| ||||| | ||| || | ||| ||||| ||| Sbjct 101439 TCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 101398 >seq370 Length=116867 Score = 113 bits (124), Expect = 6e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 |||||||| |||| | | | ||| ||||| |||||||| | || || ||| Sbjct 20320 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 20379 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 |||||||| || ||| ||||||||| || |||| || || | || ||| || |||||| Sbjct 20380 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 20439 Query 77063 ATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122 ||| |||| || ||||| | ||||||||| | || |||||||||||||| || || Sbjct 20440 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 20499 Query 77123 GGTCGTTCTACA 77134 |||| ||| ||| Sbjct 20500 GGTCTTTCAACA 20511 Score = 100 bits (110), Expect = 4e-16 Identities = 195/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 |||||||||||||| || ||||||||||||||| || |||||||| ||| || Sbjct 19192 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 19251 Query 76187 ATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 76245 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 19252 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 19311 Query 76246 -TTTTCCATCTATCACAAACATATTAAG----AGCTATAGATGCTAGATTACAAACGGCT 76300 ||||| || | | |||| ||| || | || || |||| ||||||||||||| Sbjct 19312 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 19371 Query 76301 ACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 || |||| | | ||||| | || || || |||| |||| || | ||||| Sbjct 19372 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 19431 Query 76361 CCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAA 76406 |||||||| | ||| || |||| ||||| || || |||||| Sbjct 19432 CCAAGATTCTTTTGATTAGATTTTTCATTACAAGAATC--TATAAA 19475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712834624830720