Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq9243 87.8 2e-12 >seq9243 Length=648 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 140263 GCATATGATGCAATGTTGAATGGCAAGCCCAAGAACACGTCAACACTTCTTTGATACCAC 140322 ||||| || || || ||||| |||| || || || || || |||||||||||||| | Sbjct 495 GCATAAGAAGCGATATTGAACGGCACTCCTAAAAATACATCGGCACTTCTTTGATACAAT 554 Query 140323 TGCAAATCTAAATAGCCATTACGC-ACATTAAACTGATAGAACATATGACAAGGTGGTAA 140381 || || || | || || ||| |||| ||| || | || ||||||||||||||| Sbjct 555 TGACAAGA-AAGTTTCCCTTCCGCTACATAAAATTGGAAAAATGAATGACAAGGTGGTAA 613 Query 140382 TGCCATATATTTAAGTTCAGCTGGATTCCACGCAG 140416 ||||| | | || ||| |||||||||||||||| Sbjct 614 AGCCATCTCATCAACTTCTGCTGGATTCCACGCAG 648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530268178581120