Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq9243 102 3e-17 >seq9243 Length=648 Score = 102 bits (112), Expect = 3e-17 Identities = 188/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 52081 CTGCTTGGAATGTGGGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCC 52140 |||| |||||| | || | ||||| ||||| || | || || ||| || | |||| Sbjct 648 CTGCGTGGAATCCAGCAGAAGTTGATGAGATGGCTTTACCACCTTGTCATTCATTTTTCC 589 Query 52141 AATTCTATGTAGCTGAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGT 52200 |||| |||||||| ||||| || ||||| || || |||||||| | |||||| | | Sbjct 588 AATTTTATGTAGCGGAAGGGAAACTTTCTTGTCAATTGTATCAAAGAAGTGCCGATGTAT 529 Query 52201 TCTTGGGCGTTCCGTTTAACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAG 52260 | || || || ||||| || || || ||| | ||| | || ||| | ||||| | | Sbjct 528 TTTTAGGAGTGCCGTTCAATATCGCTTCTTATGCATTGTTAACACATTTAATTGCACATG 469 Query 52261 CAGTTGGCCTTGATGTTGGTGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACA 52320 | ||| | ||||||||||||||| || | ||| || |||||||| | Sbjct 468 AATGTGGGTTAGATGTTGGTGAATTCGTTCATAGCTTTGGAGATACACATATCTATTTAA 409 Query 52321 ACCATGTAGATCAGGTTAGGGAACAGTGTAGTCGCG 52356 | ||| |||| || || | |||||| ||||||| Sbjct 408 ATCATTTAGAGCAAGTAAATGAACAGCTAAGTCGCG 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190070726261560