Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_031228.1 Length=60606 Score E Sequences producing significant alignments: (Bits) Value seq11023 515 2e-141 >seq11023 Length=509 Score = 515 bits (570), Expect = 2e-141 Identities = 420/509 (83%), Gaps = 12/509 (2%) Strand=Plus/Minus Query 13412 CATGTTCGCGTTCGCGCAGGGATGGCCGATGGCCGAAGCACTAATCGATCCGGAAGGCGT 13471 ||||||||| ||||||||||| |||||| | |||||| || ||| ||||||| || Sbjct 509 CATGTTCGCCTTCGCGCAGGGCTGGCCGCTTAACGAAGCCCTCGTCGCGCCGGAAGCAGT 450 Query 13472 CGCCCCGGCATCCGCCCGGACGTGGCAATACGAATTCCGAAACCACAAGGACAGCAACGA 13531 || ||| | || ||||| | |||| ||||||||||| ||| ||| ||||||||||| Sbjct 449 TGCACCGTCGGCCTCCCGGTCATGGCGGTACGAATTCCGGAACGTCAAAGACAGCAACGA 390 Query 13532 TTATTCCGAATTAGTCAAAGTGTTGCATGATGCGTTGACACAAGCCGCGTATGGTAAAGG 13591 |||||||||||||||||||||| | || |||||| |||| |||||||||||||||||||| Sbjct 389 TTATTCCGAATTAGTCAAAGTGCTACACGATGCGCTGACGCAAGCCGCGTATGGTAAAGG 330 Query 13592 TCGGGAACGCCACGCGAATGACCTGCCGTTCAGCCAACAACCGATGCAGGCGATTTCCAG 13651 || || |||||||| |||||||||||||||||||| || |||||| | || ||||| Sbjct 329 GCGCGAGCGCCACGCCAATGACCTGCCGTTCAGCCAGCAGCCGATGAACGCCATTTCTGA 270 Query 13652 CATGATCGATAGCCCGCTTGGCATGGTCTATCAGGTGTGCAAGAAGGTCTGCGAAGGCGT 13711 | |||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||| Sbjct 269 CCTGATCGGTAGCCCGCTCGGCTTGGTCTATCAGGTGTGCAAGAAGGTCGTAGAAGGCGT 210 Query 13712 CAACCTTCCGACCCACGAACAACGGGTAAGGGAGTTGCTCGGAGTAATCAATTATACTGC 13771 |||||| || || || || ||| |||| |||||||||||||| || |||||||||||||| Sbjct 209 CAACCTGCCAACGCATGACCAAAGGGTTAGGGAGTTGCTCGGCGTGATCAATTATACTGC 150 Query 13772 CGGGATTGTCATCTGGCTAAA---CCATCAA------CAACCAAAGGACTAAA---TACA 13819 ||||||||||||||||||||| ||| ||| | ||| ||||| |||| || Sbjct 149 CGGGATTGTCATCTGGCTAAATCGCCACCAATCAAATCCACCGAAGGAATAAAGGGGCCA 90 Query 13820 CCATGAAAAAGATCGCTGCGCTAACGCTGTTCGGAATCATCATTCTCGGTGTGCTGTTCA 13879 ||||||| ||||||||||||||||||||||| | | | || || |||||||||||| Sbjct 89 CCATGAAGAAGATCGCTGCGCTAACGCTGTTTGTATTGATTATCTGCGGTGTGCTGTTTG 30 Query 13880 TCATTGGCCGTGTGGGCGCGGCGATCGGG 13908 ||||||||||||||||||||||||||||| Sbjct 29 TCATTGGCCGTGTGGGCGCGGCGATCGGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193791831465536