Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1465 136 9e-27 seq218 129 1e-24 seq256 118 2e-21 seq575 98.7 2e-15 >seq1465 Length=43607 Score = 136 bits (150), Expect = 9e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| ||||| |||||||| |||||||| | || || | ||||| Sbjct 26800 GAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATC 26859 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| | ||| ||||| ||||| |||| | ||||| |||| | || ||||| || | Sbjct 26860 TTCCAATTGTTTACCGGCAAAGATCAAGCGT-TGCTGATCCGGGGGAATGCCTTCTTTGT 26918 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||| || || | | | ||||| |||||||||||||||||||| Sbjct 26919 CTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAG 26978 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| ||||| | ||||| Sbjct 26979 TTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 27012 >seq218 Length=131350 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| || || ||||| || || || || | |||||| | |||||| Sbjct 41574 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 41633 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | ||| ||||||||||| |||| | || || || | | ||| |||||||| || Sbjct 41634 TCCAATTGTTTACCGGCGAAGATCAAGCGT-TGTTGATCTGGGGGGATACCTTCCTTATC 41692 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| ||| ||| || |||| | | || || ||| |||||||||||||| || Sbjct 41693 TTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGT 41752 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || ||||||||||| ||||| | ||||| Sbjct 41753 TTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| || || ||||| | || || | ||||| Sbjct 41801 GAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATC 41860 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||| || |||||||| |||| | || || || | | ||| ||||| || | Sbjct 41861 TTCTAATTGTTTACCAGCGAAGATCAAGCGT-TGTTGATCTGGAGGGATACCTTCTTTAT 41919 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||| || |||| | | || || ||| |||||||||||||| | Sbjct 41920 CTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTG 41979 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| ||||| ||||| | ||||| Sbjct 41980 TTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 42013 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| ||||| || || | || || | ||||| Sbjct 42029 GAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATC 42088 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||| || |||||||| |||| | || || || | | ||| ||||| || | Sbjct 42089 TTCTAATTGTTTACCAGCGAAGATCAAGCGT-TGTTGATCTGGGGGGATACCTTCTTTAT 42147 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| ||| ||| || |||| | | || || ||||||||||||||| || | Sbjct 42148 CTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTG 42207 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || || || ||||| | ||||| Sbjct 42208 TTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 107 bits (118), Expect = 4e-18 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| || || ||||| | ||||| | |||||| Sbjct 42257 GAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATC 42316 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| | ||| || |||||||| |||| | || || || | | ||||||||||| | Sbjct 42317 TTCCAATTGTTTACCAGCGAAGATTAAGCGT-TGTTGATCTGGAGGAATTCCTTCCTTAT 42375 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAAGAGTAAT 152068 ||||||| ||| ||| || || | | || || | ||| |||||||| ||||| Sbjct 42376 CTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGA--CTCGACTTCAAGGGTAAT 42433 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || ||||| ||||| | ||||| Sbjct 42434 GGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 42469 >seq256 Length=68436 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||||||||| || |||||||| || ||||| |||| | |||| ||||| Sbjct 65880 GAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATC 65939 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || ||||| || || | |||||||| | | ||| || ||||| || Sbjct 65940 CTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATC 65999 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| ||| || || | | | || || |||||| || | || || || Sbjct 66000 TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGT 66059 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| ||||| ||||||| ||||| Sbjct 66060 TTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || ||||||||||| ||||||||||| ||||| ||||| | | || | Sbjct 66103 AGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGA 66162 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || ||| || ||||| ||||| | |||||||| | | |||||||| Sbjct 66163 CCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCT 66222 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||||||| ||| || || | |||| ||| || |||||||| || Sbjct 66223 TTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTG 66282 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || ||||||| ||||| Sbjct 66283 ATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 66320 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || ||||||||||| || ||||| || | | |||| ||||| Sbjct 65653 AGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCC 65712 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || || | ||||| || | | || ||||| || ||| Sbjct 65713 TCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCT 65772 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||| || || | | | || ||| ||| ||||| | |||||| ||| Sbjct 65773 TGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTT 65832 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || | ||||| Sbjct 65833 TTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || |||||||| || |||||||||||||| ||||| | | ||| | Sbjct 65418 GAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACG 65477 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || || ||||| || | | ||||| || | | ||| || || Sbjct 65478 ACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTC 65537 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||||||||| ||| || || | | | || || || || ||||| || Sbjct 65538 TTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGT 65597 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || || || || || | ||||| Sbjct 65598 AATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 65636 >seq575 Length=50698 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC--CCATCTTCTAGGCTTTTCC 151965 || || |||||||| || |||||||||| ||||| | |||||||||| ||| | Sbjct 22940 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTTCTAACTGTTTAC 22997 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || || || | | || || |||| | ||||||||| || ||||||||||||| || Sbjct 22998 CAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTT 23057 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 |||| | || | | | || ||| || ||||| | |||||| ||||| || || || | Sbjct 23058 TGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTG 23117 Query 152086 TCTTCACGAAGACCTGCATTTT 152107 | || || || | ||||| || Sbjct 23118 TTTTAACAAAAATTTGCATGTT 23139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153655285848516