Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq256 168 1e-36 seq218 150 4e-31 seq1465 132 1e-25 seq575 127 4e-24 seq409 93.3 9e-14 seq1727 86.0 1e-11 >seq256 Length=68436 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| | || |||||||| || |||||||||| Sbjct 65637 ACCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGA 65696 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| |||||||| ||||| || || | |||||| || || || Sbjct 65697 AAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 65756 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||| |||||||||||||| |||||| || || |||| || || Sbjct 65757 AATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 65816 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || || || || || | ||| ||||| || || ||||| Sbjct 65817 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 65864 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | ||| ||||||||| || |||||||| | Sbjct 65865 ACCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGA 65924 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| |||||||| || || || || | |||||| ||||| || Sbjct 65925 AAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 65984 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||| || || | |||||| ||||| || ||||| | || || Sbjct 65985 GATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 66044 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 66045 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 66092 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || ||||||||||||||| || || | Sbjct 65409 ACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGA 65468 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | ||| || || || || ||||||||||| || || || Sbjct 65469 AAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGG 65528 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| || ||||| || || | ||| || ||| || || || || | |||||| Sbjct 65529 GATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGAC 65588 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| || | || || || || || ||||| Sbjct 65589 CTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 65636 >seq218 Length=131350 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | | |||||||| ||||| | || ||| ||||| || || ||||| | Sbjct 41558 ACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGA 41617 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || | |||||| ||||| |||||||| |||||||| || || Sbjct 41618 TAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGG 41677 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| ||||| ||||| ||||||||||| || ||| || || || || | ||||| Sbjct 41678 GATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 41737 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || || ||||| || | |||||| ||||| || ||||| Sbjct 41738 TTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 41785 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | | || ||||| ||||| | ||| ||||||||| ||||| ||||| | Sbjct 42014 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGA 42073 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| |||| |||||| || || |||||||| |||||||| || || Sbjct 42074 CAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGG 42133 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| || || ||||| ||||||||||| || || || || || || | || || Sbjct 42134 GATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 42193 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| || ||||| |||| || |||||||| || ||||| Sbjct 42194 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 42241 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || |||||||| ||||| | || ||||||||| || || || || | Sbjct 41330 ACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGA 41389 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || | |||||| || || |||||||| ||||| || || || Sbjct 41390 TAAAGTACGGCCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 41449 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| ||||||||||| || || || || || || | || || Sbjct 41450 AATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 41509 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || ||||| || | ||||| ||||| || ||||| Sbjct 41510 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 41557 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | | || ||||| ||||| | || ||||||||| || || || || | Sbjct 42242 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGA 42301 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| || || ||||| || |||||||| || || Sbjct 42302 CAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGG 42361 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| ||||||||||| || ||| ||||| || | ||||| Sbjct 42362 AATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGAC 42421 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || || || || | ||||| |||||||| ||||| Sbjct 42422 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 42469 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||| || || |||||||| ||||| || || || ||||| || |||| ||| |||| Sbjct 42786 TACCTTCTTTATCTTGGATTTTTGCCTTGACTTGGTCAATAGTATCTGAAGATTCAACTT 42845 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||||| || ||||| || || | |||||| ||||| || ||||| || Sbjct 42846 CGAGAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATGTT 42894 >seq1465 Length=43607 Score = 132 bits (146), Expect = 1e-25 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || |||||||| ||||| || | |||| || || ||||| || | |||||| |||||||| Sbjct 26822 TCCTTTTGGATATTGTAATCTGACAAG-GTACGTCCATCTTCCAATTGTTTACCGGCAAA 26880 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| ||||| || || ||||| || || |||||||| ||||| ||||| || Sbjct 26881 GATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTG 26940 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || || | || ||||| ||||| || || ||||| || | ||||||||| Sbjct 26941 GTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAAC 27000 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 27001 GAAAATTTGCAT 27012 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || ||||||||||| || |||| || || || ||||| |||| ||| ||| Sbjct 27221 ATACCTTCTTTGTCTTGGATTTTGCCTTTGACTTGGTCAATGGTGTCAGAAGATTCAACT 27280 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| ||||| || || | |||||| ||||| || ||||| || Sbjct 27281 TCAAGAGTGATAGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATGTT 27330 >seq575 Length=50698 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || | |||||||||| ||||| || ||||||||| || ||||| || | | Sbjct 22910 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 22969 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || | || ||||| |||| ||||| || ||||| || ||||||||||| || || Sbjct 22970 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 23029 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || ||||| || ||| |||| || ||||||| || || | ||| ||| Sbjct 23030 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 23089 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||| || || ||||| || | || ||||| || || ||||| || Sbjct 23090 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTT 23139 >seq409 Length=84249 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||| || ||||| ||||| | || || | ||| |||||||| || | || || | Sbjct 72376 TACCCTCTTTATCTTGTATCTTGGTCTTGACAGCATCAATAGTGTCGGATGACTCAACCT 72435 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 72436 CAAGGGTGATAGTCTTACCCGTCAAAGTTTTCACGAAAATCTGCAT 72481 >seq1727 Length=26445 Score = 86.0 bits (94), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 282977 TTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGT 283036 |||||| ||| ||| | || |||| |||||| ||||||| || || ||| ||||| Sbjct 20504 TTGTTGATCA---GGAGAAACCACCTTATCTTGGGTCTTTGCCTTGACTTGATCAATAGT 20448 Query 283037 GTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 || |||| ||| |||||||||||||| ||||| || | | ||| || || || ||||| Sbjct 20447 ATCAGAAGATTCAACTTCGAGAGTGATAGTCTTTCCAGCGAGAGTTTTTACAAAAATCTG 20388 Query 283097 CAT 283099 ||| Sbjct 20387 CAT 20385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046589046570184