Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq54 183 3e-41 >seq54 Length=215934 Score = 183 bits (202), Expect = 3e-41 Identities = 344/499 (69%), Gaps = 10/499 (2%) Strand=Plus/Minus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || ||||||| || ||||||||| || || ||| |||| || |||||||| |||| Sbjct 102357 TACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTAC 102298 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--T 23318 | | ||| || |||||||||||||| ||||| | |||||| | | || | Sbjct 102297 CTTGTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA-ATTTTGCT 102239 Query 23319 ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATC 23378 || | | | || ||| | ||||| ||||||||||||||||||| ||| |||| Sbjct 102238 CCACCA-AGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATT 102180 Query 23379 ATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGA 23438 ||| ||||| |||| || ||||| | || || ||| ||| || ||| || | Sbjct 102179 CGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGT 102120 Query 23439 AACAGCATC---TTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATA 23495 ||| || || | |||| || ||| | || || |||| | | || Sbjct 102119 AACCGCTTCCGCTATAATAGCTTCTACAGTTT-TTGTTGG--AGGTCGTGCACGAAGATG 102063 Query 23496 CTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 | || || | |||||||||||||||||| | |||||||| | | ||| | ||| || Sbjct 102062 AGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTT 102003 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGA 23615 ||||| |||||||||||||| | ||||| ||| || | |||||| |||| || || | Sbjct 102002 GGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGC 101943 Query 23616 TCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC 23675 ||| |||||||| || || |||||||| ||||| || ||||||||| | |||||| | Sbjct 101942 TCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGA 101883 Query 23676 ATTATAATCAGAAATCCAT 23694 | | ||| ||||||||| Sbjct 101882 TTCCTTATCGGAAATCCAT 101864 Score = 141 bits (156), Expect = 1e-28 Identities = 171/231 (74%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 23803 TACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCA 23862 |||||||| ||||| |||||||| || |||||||| |||||||||||||| ||||| Sbjct 101676 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 101617 Query 23863 GACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTA 23922 | | ||| || |||||| ||| | || |||||||||| || ||||||||||| Sbjct 101616 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 101557 Query 23923 GCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTT--- 23979 || |||||||| || | ||| | ||||| | |||| ||| | | ||| ||| Sbjct 101556 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCA-TCGTTAAGTTTATA 101498 Query 23980 -TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | ||||||||| ||||| || || | |||||||| ||||| |||||||| Sbjct 101497 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAA 101447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521415017754400