Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593125.1_202016-03- 16] 11,196 sequences; 125,353,551 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq256 165 2e-35 seq575 150 4e-31 seq1465 145 2e-29 seq218 141 2e-28 seq770 91.5 4e-13 seq645 87.8 4e-12 >seq256 Length=68436 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || ||||| || |||||||| || || ||| || ||| Sbjct 66317 CAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGAC 66258 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||| ||||| |||||||||||||| || || ||||||||| Sbjct 66257 ACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAA 66198 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| || ||||| || | || ||| | ||||||||| | Sbjct 66197 CGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAACATT 66138 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| ||||| || ||||| || Sbjct 66137 CAAAAAGAGTCAACTCTTCATCTAGT 66112 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || || ||||| ||||| ||||| ||| || || Sbjct 65633 CAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCTGAT 65574 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| || ||||| || ||||| || |||||||| || |||||| Sbjct 65573 ACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAGCAA 65514 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | |||||||| | |||||| | ||||||||| || Sbjct 65513 CGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAACATC 65454 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || || || || Sbjct 65453 CAAAAAGAATCAACTCTTCACCTCGT 65428 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || |||||||| || || | || || || || || Sbjct 65861 CAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCCGAT 65802 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| ||||||||| ||||||||||| || || || || |||||| Sbjct 65801 ACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAGCAA 65742 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| || || |||||| | || ||| | || || || | Sbjct 65741 CGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAATATT 65682 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| |||||||| ||| Sbjct 65681 CAAAAAGAGTCAACACTTCAT 65661 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || ||||| |||||| | || || || ||| || Sbjct 66089 CAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGGAT 66030 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| || ||||| || || || || ||||| || ||||||||| Sbjct 66029 ACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGCAA 65970 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| || || |||||| | || ||| |||| || || | Sbjct 65969 CGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATATT 65910 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || ||||| ||| Sbjct 65909 CAAAAAGAATCCACTCTTCATCTCGTT 65883 >seq575 Length=50698 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || | || || ||||| || Sbjct 23133 CAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCGAT 23074 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||| ||||| || |||||||||||||| ||||| || ||| Sbjct 23073 ACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAACAA 23014 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | ||||||||| | | ||| ||||||| || | Sbjct 23013 CGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGATTACAATATT 22954 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||||||| | || |||| Sbjct 22953 CAAAAAGAATCAACATTACA-CTTG 22930 >seq1465 Length=43607 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || ||||| || || || || || || |||||| Sbjct 27009 CAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCAGAT 26950 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| ||||||||||| || || ||||| |||||| Sbjct 26949 ACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAGCAA 26890 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| ||||| | ||||||||| | || |||| | ||||| || | Sbjct 26889 CGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTAC-CTTGTCAGATTACAATAT 26831 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 |||||| || ||||| || ||||| || Sbjct 26830 CCAAAAGGAGTCAACTCTCCATCTCGT 26804 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| || ||||| || || || || || ||| || || Sbjct 26781 CAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCTGAT 26722 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | ||||| ||||||||| ||||||||||| |||||||| || || ||| Sbjct 26721 ACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAACAA 26662 Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067 || | || || || || |||||| Sbjct 26661 AGATTGATTTTTGCTGGCAAACAG 26638 >seq218 Length=131350 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || ||||| || || || ||| || Sbjct 41554 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTGAT 41495 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| || ||||| || |||||| Sbjct 41494 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCAA 41435 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 41434 CGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGCCGTACTTTATCGGATTATAATATT 41375 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 41374 CAAAAAGAATCTACTCTCCATCTCGT 41349 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || ||||| || || || || || || ||| || Sbjct 41782 CAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGAT 41723 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| ||||| || || || ||| Sbjct 41722 ACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAA 41663 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| | |||||||| | ||| | | || ||||| | Sbjct 41662 CGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATT 41603 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| |||||||| || ||||| || Sbjct 41602 CAAAAGGAATCAACTCTCCATCTCGT 41577 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || || || || || || ||| || Sbjct 42010 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGAT 41951 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| || |||||||| |||||||| || || ||| Sbjct 41950 ACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAACAA 41891 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || | | |||||||| | Sbjct 41890 CGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAATATT 41831 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 41830 CAAAAAGAATCAACTCTCCATCTCGT 41805 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||| ||||| || || || || ||| || Sbjct 42238 CAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTGAT 42179 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || |||||||| ||||| || || || ||| Sbjct 42178 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAACAA 42119 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || | | || |||||| | Sbjct 42118 CGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACATT 42059 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 42058 CAAAAAGAATCCACTCTCCATCTCGT 42033 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||| || ||||| || || || | || Sbjct 42466 CAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATGAT 42407 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||||||||| || || |||||||| ||||| || || ||| Sbjct 42406 ACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 42347 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 42346 CGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAATATT 42287 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 42286 CAAAAAGAATCAACTCTCCATCTCGT 42261 >seq770 Length=40003 Score = 91.5 bits (100), Expect = 4e-13 Identities = 152/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAG 177981 ||||||| |||||||| | || |||||||| | | ||| || | || |||| | Sbjct 15058 AAATTTT-GTGAAAACATTGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGC---G 15113 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || | | ||| ||| | || | |||||||| || ||||| ||||||| Sbjct 15114 ACACTATTGATATGATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGC 15173 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| |||| || || || || || | || ||||||| ||| | | |||||||| Sbjct 15174 AACGTATTATTTTTGCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTATAATA 15233 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| |||| || || |||||||||| | ||||| Sbjct 15234 TTCAAGAAGAGTCTACGTTGCATCTTGTACTTAGACT 15270 >seq645 Length=46104 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||| | |||||||||||||| ||||| || || ||||| ||||| || || || | Sbjct 29659 AAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACAACGCCTTATTTTTGCTGGCACG 29600 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 || | ||||| ||| | || |||| | |||||| | |||||||||| | ||| | || Sbjct 29599 CAATTAGAAGAAGGACGTAC-CTTGTCAGATTATTATATCCAAAAAGAGTGCACAATTCA 29541 Query 178124 TCTTGTTTTGAGACT 178138 |||||| | ||||| Sbjct 29540 TCTTGTACTTAGACT 29526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203558526264024